PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42351-42400 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.0650 | 84.5638 | 85.5721 | 60.8569 | 126 | 23 | 344 | 58 | 50 | 86.2069 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 88.5572 | 91.7526 | 85.5769 | 93.7799 | 89 | 8 | 89 | 15 | 3 | 20.0000 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | * | 57.7918 | 43.6268 | 85.5779 | 66.0006 | 13896 | 17956 | 13891 | 2341 | 2055 | 87.7830 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | het | 82.2726 | 79.2056 | 85.5867 | 66.5243 | 678 | 178 | 671 | 113 | 110 | 97.3451 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| gduggal-snapvard | INDEL | * | segdup | * | 85.3233 | 85.0548 | 85.5935 | 95.1733 | 2174 | 382 | 2430 | 409 | 309 | 75.5501 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.1814 | 73.6559 | 85.6031 | 65.5957 | 137 | 49 | 220 | 37 | 23 | 62.1622 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | * | 57.9744 | 43.8280 | 85.6051 | 66.1929 | 14117 | 18093 | 14112 | 2373 | 2083 | 87.7792 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.9110 | 37.2480 | 85.6132 | 63.2900 | 425 | 716 | 363 | 61 | 61 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_siren | * | 85.4653 | 85.3147 | 85.6164 | 91.3558 | 122 | 21 | 125 | 21 | 10 | 47.6190 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.6041 | 74.3750 | 85.6240 | 66.7717 | 119 | 41 | 542 | 91 | 45 | 49.4505 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | * | 67.1787 | 55.2699 | 85.6287 | 82.9069 | 430 | 348 | 429 | 72 | 64 | 88.8889 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | het | 83.9323 | 82.2912 | 85.6402 | 78.9688 | 3369 | 725 | 3137 | 526 | 520 | 98.8593 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.0530 | 88.5102 | 85.6431 | 75.6731 | 1610 | 209 | 1718 | 288 | 261 | 90.6250 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.0530 | 88.5102 | 85.6431 | 75.6731 | 1610 | 209 | 1718 | 288 | 261 | 90.6250 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.5470 | 96.0437 | 85.6454 | 67.9552 | 704 | 29 | 710 | 119 | 13 | 10.9244 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.0985 | 86.5550 | 85.6468 | 63.2965 | 1912 | 297 | 1993 | 334 | 189 | 56.5868 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 90.6674 | 96.3091 | 85.6501 | 61.6361 | 3627 | 139 | 3623 | 607 | 603 | 99.3410 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 90.6674 | 96.3091 | 85.6501 | 61.6361 | 3627 | 139 | 3623 | 607 | 603 | 99.3410 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.2076 | 65.4545 | 85.6631 | 71.8750 | 252 | 133 | 239 | 40 | 3 | 7.5000 | |
| jlack-gatk | INDEL | I1_5 | segdup | het | 91.7231 | 98.6989 | 85.6683 | 96.3967 | 531 | 7 | 532 | 89 | 1 | 1.1236 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.6766 | 79.8823 | 85.6735 | 55.5568 | 14116 | 3555 | 14119 | 2361 | 2322 | 98.3482 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 82.6766 | 79.8823 | 85.6735 | 55.5568 | 14116 | 3555 | 14119 | 2361 | 2322 | 98.3482 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.5507 | 98.2850 | 85.6800 | 74.8152 | 1490 | 26 | 1430 | 239 | 16 | 6.6946 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9883 | 99.2888 | 85.6879 | 49.6867 | 7399 | 53 | 7430 | 1241 | 43 | 3.4650 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.9525 | 73.1884 | 85.7021 | 53.5402 | 303 | 111 | 1001 | 167 | 136 | 81.4371 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.1304 | 25.3521 | 85.7143 | 57.1429 | 18 | 53 | 18 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 89.1473 | 24 | 4 | 24 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 36.6412 | 23.3010 | 85.7143 | 59.4203 | 48 | 158 | 48 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 96.7290 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 85.7143 | 93.6364 | 0 | 0 | 18 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 85.7143 | 93.4579 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.7569 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 97.7199 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | homalt | 80.0000 | 75.0000 | 85.7143 | 94.8148 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | het | 80.0000 | 75.0000 | 85.7143 | 93.7500 | 12 | 4 | 12 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.0355 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.8970 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | decoy | * | 92.3077 | 100.0000 | 85.7143 | 99.0085 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.3774 | 73.9130 | 85.7143 | 59.6154 | 34 | 12 | 36 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 92.5134 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |