PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42051-42100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.3943 | 37.9325 | 84.6777 | 63.9143 | 5229 | 8556 | 5018 | 908 | 475 | 52.3128 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | het | 78.9799 | 73.9962 | 84.6833 | 75.5859 | 11408 | 4009 | 11406 | 2063 | 73 | 3.5385 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.5127 | 86.3519 | 84.6897 | 75.2304 | 5340 | 844 | 5349 | 967 | 23 | 2.3785 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 88.2979 | 92.2222 | 84.6939 | 93.9840 | 83 | 7 | 83 | 15 | 3 | 20.0000 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | * | 90.6461 | 97.4959 | 84.6957 | 92.1274 | 7787 | 200 | 7709 | 1393 | 45 | 3.2304 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 79.5099 | 74.9211 | 84.6975 | 89.9093 | 950 | 318 | 952 | 172 | 40 | 23.2558 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.2657 | 96.6139 | 84.7002 | 79.3155 | 1769 | 62 | 1766 | 319 | 5 | 1.5674 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6669 | 63.6190 | 84.7150 | 61.4963 | 668 | 382 | 654 | 118 | 77 | 65.2542 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.1982 | 70.9029 | 84.7203 | 46.8070 | 6706 | 2752 | 6831 | 1232 | 1026 | 83.2792 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.3250 | 96.7213 | 84.7222 | 88.5350 | 59 | 2 | 61 | 11 | 10 | 90.9091 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 89.7059 | 95.3125 | 84.7222 | 93.7984 | 61 | 3 | 61 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.3446 | 96.7651 | 84.7231 | 88.8814 | 1376 | 46 | 1392 | 251 | 38 | 15.1394 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.7444 | 68.4857 | 84.7242 | 61.9892 | 502 | 231 | 599 | 108 | 100 | 92.5926 | |
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | het | 81.0028 | 77.5920 | 84.7273 | 95.7225 | 232 | 67 | 233 | 42 | 1 | 2.3810 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 57.7611 | 43.8153 | 84.7293 | 69.3664 | 1594 | 2044 | 1487 | 268 | 182 | 67.9104 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | * | 65.6309 | 53.5565 | 84.7345 | 81.1195 | 384 | 333 | 383 | 69 | 61 | 88.4058 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.9953 | 87.2932 | 84.7354 | 73.4127 | 1161 | 169 | 1249 | 225 | 212 | 94.2222 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 84.7368 | 95.3466 | 0 | 0 | 161 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | * | func_cds | het | 91.1447 | 98.5981 | 84.7390 | 55.3763 | 211 | 3 | 211 | 38 | 24 | 63.1579 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | * | 90.7711 | 97.7240 | 84.7419 | 86.2817 | 4079 | 95 | 4071 | 733 | 21 | 2.8649 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.6593 | 88.6640 | 84.7432 | 65.8939 | 219 | 28 | 561 | 101 | 76 | 75.2475 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | het | 90.2047 | 96.4159 | 84.7453 | 80.5659 | 20445 | 760 | 20216 | 3639 | 248 | 6.8151 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.7908 | 82.8571 | 84.7458 | 75.8197 | 29 | 6 | 50 | 9 | 3 | 33.3333 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | het | 89.2857 | 94.3396 | 84.7458 | 98.0281 | 50 | 3 | 50 | 9 | 1 | 11.1111 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.1218 | 85.4985 | 84.7484 | 72.4437 | 566 | 96 | 539 | 97 | 47 | 48.4536 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | * | 79.1043 | 74.1571 | 84.7587 | 76.7783 | 11877 | 4139 | 11873 | 2135 | 521 | 24.4028 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.2766 | 96.5517 | 84.7674 | 66.2145 | 588 | 21 | 1330 | 239 | 80 | 33.4728 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| mlin-fermikit | INDEL | D16_PLUS | * | het | 88.5250 | 92.6242 | 84.7733 | 71.4486 | 2926 | 233 | 2767 | 497 | 415 | 83.5010 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.7219 | 95.2762 | 84.7795 | 79.3418 | 1190 | 59 | 1192 | 214 | 189 | 88.3178 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.7219 | 95.2762 | 84.7795 | 79.3418 | 1190 | 59 | 1192 | 214 | 189 | 88.3178 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | het | 90.6936 | 97.4909 | 84.7824 | 82.7072 | 10180 | 262 | 10151 | 1822 | 114 | 6.2569 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.6552 | 95.1220 | 84.7826 | 76.1039 | 78 | 4 | 78 | 14 | 14 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | * | segdup | het | 72.6201 | 63.5061 | 84.7882 | 95.6374 | 931 | 535 | 981 | 176 | 91 | 51.7045 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 79.5047 | 74.8408 | 84.7885 | 89.8548 | 940 | 316 | 942 | 169 | 39 | 23.0769 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 50.4391 | 35.8961 | 84.7921 | 83.3242 | 677 | 1209 | 775 | 139 | 23 | 16.5468 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6343 | 97.3404 | 84.7926 | 70.8333 | 183 | 5 | 184 | 33 | 32 | 96.9697 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 89.3333 | 94.3662 | 84.8101 | 93.8807 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.8579 | 97.8289 | 84.8143 | 63.2556 | 10499 | 233 | 10461 | 1873 | 64 | 3.4170 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.7993 | 95.4044 | 84.8163 | 74.1070 | 1038 | 50 | 1039 | 186 | 169 | 90.8602 | |