PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41951-42000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | het | 83.7321 | 82.9384 | 84.5411 | 97.5144 | 175 | 36 | 175 | 32 | 3 | 9.3750 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.1325 | 94.2362 | 84.5533 | 48.1916 | 3646 | 223 | 3246 | 593 | 548 | 92.4115 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 53.5363 | 39.1660 | 84.5632 | 59.4976 | 1869 | 2903 | 1868 | 341 | 287 | 84.1642 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | * | 47.0199 | 32.5617 | 84.5718 | 76.5901 | 1491 | 3088 | 1491 | 272 | 230 | 84.5588 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | het | 90.7389 | 97.8759 | 84.5721 | 93.7676 | 4654 | 101 | 4654 | 849 | 57 | 6.7138 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 51.4209 | 36.9403 | 84.5736 | 68.1324 | 2178 | 3718 | 2182 | 398 | 329 | 82.6633 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 51.4209 | 36.9403 | 84.5736 | 68.1324 | 2178 | 3718 | 2182 | 398 | 329 | 82.6633 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.8643 | 91.4147 | 84.5794 | 78.5110 | 26247 | 2465 | 26903 | 4905 | 1242 | 25.3211 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.8643 | 91.4147 | 84.5794 | 78.5110 | 26247 | 2465 | 26903 | 4905 | 1242 | 25.3211 | |
| ciseli-custom | INDEL | * | * | * | 83.5453 | 82.5314 | 84.5844 | 60.0787 | 284352 | 60186 | 284718 | 51890 | 36584 | 70.5030 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | het | 89.0728 | 94.0559 | 84.5912 | 95.1175 | 538 | 34 | 538 | 98 | 12 | 12.2449 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.6947 | 65.2837 | 84.5936 | 37.0238 | 771 | 410 | 895 | 163 | 163 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | homalt | 64.7059 | 52.3810 | 84.6154 | 75.0000 | 11 | 10 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.1822 | 76.1905 | 84.6154 | 73.4694 | 64 | 20 | 33 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7434 | 80.9524 | 84.6154 | 92.0408 | 34 | 8 | 33 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | * | 62.8571 | 50.0000 | 84.6154 | 96.0366 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | * | 62.8571 | 50.0000 | 84.6154 | 96.0961 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7391 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.4595 | 45.8333 | 84.6154 | 35.0000 | 11 | 13 | 11 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.0526 | 77.7778 | 84.6154 | 96.1310 | 21 | 6 | 22 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.2247 | 90.0000 | 84.6154 | 96.3483 | 9 | 1 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.9679 | 70.5882 | 84.6154 | 95.8861 | 12 | 5 | 11 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1367 | 0 | 0 | 22 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.7801 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 98.9185 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.6154 | 95.9752 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | het | 74.1304 | 65.9574 | 84.6154 | 79.8969 | 31 | 16 | 33 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 91.2863 | 99.0991 | 84.6154 | 97.2792 | 110 | 1 | 110 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 87.8505 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.5768 | 56.2500 | 84.6154 | 95.9248 | 9 | 7 | 11 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.5075 | 95.0000 | 84.6154 | 95.0570 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 85.7143 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 93.0108 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 67.0732 | 55.5556 | 84.6154 | 78.3333 | 10 | 8 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 84.6154 | 97.5655 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 84.6154 | 96.8675 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 84.6154 | 95.9752 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 88.7931 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 90.1515 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 90.2985 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 97.2458 | 11 | 1 | 11 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4578 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 86.2745 | 88.0000 | 84.6154 | 95.7861 | 22 | 3 | 22 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 86.2745 | 88.0000 | 84.6154 | 96.2963 | 22 | 3 | 22 | 4 | 0 | 0.0000 | |