PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41401-41450 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | map_siren | homalt | 76.9231 | 71.4286 | 83.3333 | 85.1240 | 15 | 6 | 15 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 96.7033 | 37 | 0 | 35 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.5709 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.8586 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 97.1564 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 97.1698 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 98.5542 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.9798 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 98.5366 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 98.5507 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 97.3897 | 37 | 0 | 35 | 7 | 1 | 14.2857 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | hetalt | 69.7674 | 60.0000 | 83.3333 | 72.7273 | 3 | 2 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 83.3333 | 96.1290 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 83.3333 | 92.2078 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 83.3333 | 98.0583 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.9452 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.4737 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 83.3333 | 95.1299 | 0 | 0 | 50 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 83.3333 | 92.0000 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8723 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4225 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 93.9394 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | decoy | het | 83.3333 | 83.3333 | 83.3333 | 99.9657 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.5297 | 59.6491 | 83.3333 | 65.9574 | 238 | 161 | 240 | 48 | 46 | 95.8333 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.3039 | 20 | 8 | 20 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 71.4286 | 83.3333 | 99.4902 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 88.7850 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 90.0000 | 97.8261 | 83.3333 | 98.2813 | 45 | 1 | 45 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 92.3858 | 25 | 0 | 25 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.3333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.6577 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.7207 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 90.9091 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 79.3103 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.6452 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 80.6452 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.8477 | 64.7059 | 83.3333 | 95.1613 | 11 | 6 | 10 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 83.3333 | 97.8873 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 71.4286 | 62.5000 | 83.3333 | 62.5000 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 87.7193 | 92.5926 | 83.3333 | 97.3545 | 25 | 2 | 25 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 86.2069 | 89.2857 | 83.3333 | 97.4116 | 25 | 3 | 25 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 99.7121 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |