PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41351-41400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.3333 | 83.3333 | 83.3333 | 99.3536 | 35 | 7 | 40 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.3471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | het | 90.9091 | 100.0000 | 83.3333 | 55.5556 | 10 | 0 | 10 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 71.4286 | 62.5000 | 83.3333 | 88.8889 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.9091 | 100.0000 | 83.3333 | 97.8947 | 8 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | * | 90.9091 | 100.0000 | 83.3333 | 53.8462 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 56.6038 | 42.8571 | 83.3333 | 90.4762 | 3 | 4 | 10 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.5484 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.7500 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 85.7143 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.8235 | 45.4545 | 83.3333 | 84.2105 | 5 | 6 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.6290 | 90.1961 | 83.3333 | 89.3238 | 46 | 5 | 50 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 95.3125 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 95.4545 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.5510 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.6667 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 80.0000 | 76.9231 | 83.3333 | 88.5714 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 86.8613 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 80.0000 | 76.9231 | 83.3333 | 90.8397 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 94.6429 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 76.9231 | 83.3333 | 97.2758 | 20 | 6 | 20 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 6 | 0 | 5 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.4615 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.5233 | 92.1569 | 83.3333 | 94.0199 | 47 | 4 | 45 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8042 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 94.5946 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 95.3125 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.4684 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.5517 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |