PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41101-41150 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 89.1082 | 96.8085 | 82.5427 | 65.8679 | 455 | 15 | 435 | 92 | 82 | 89.1304 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | het | 73.0648 | 65.5393 | 82.5428 | 64.5149 | 30287 | 15925 | 32942 | 6967 | 459 | 6.5882 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.9321 | 98.7700 | 82.5458 | 58.4226 | 10600 | 132 | 10674 | 2257 | 114 | 5.0510 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | het | 89.8150 | 98.4868 | 82.5468 | 88.8499 | 781 | 12 | 1102 | 233 | 108 | 46.3519 | |
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | het | 88.1260 | 94.5093 | 82.5504 | 31.0108 | 809 | 47 | 8558 | 1809 | 764 | 42.2333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.0863 | 74.0741 | 82.5581 | 65.0407 | 60 | 21 | 71 | 15 | 14 | 93.3333 | |
| asubramanian-gatk | INDEL | D6_15 | HG002compoundhet | het | 89.0353 | 96.6121 | 82.5605 | 68.4177 | 827 | 29 | 819 | 173 | 168 | 97.1098 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.8795 | 96.2316 | 82.5710 | 64.1403 | 1047 | 41 | 1047 | 221 | 97 | 43.8914 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.4089 | 97.4545 | 82.5903 | 53.4716 | 804 | 21 | 1760 | 371 | 336 | 90.5660 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.4089 | 97.4545 | 82.5903 | 53.4716 | 804 | 21 | 1760 | 371 | 336 | 90.5660 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 75.0226 | 68.7173 | 82.6019 | 92.3012 | 525 | 239 | 527 | 111 | 23 | 20.7207 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 90.4762 | 100.0000 | 82.6087 | 90.4959 | 1 | 0 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 82.6087 | 99.9777 | 0 | 1 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8656 | 11.2903 | 82.6087 | 87.7660 | 21 | 165 | 19 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 36.0211 | 23.0321 | 82.6087 | 60.0000 | 79 | 264 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6087 | 95.6023 | 0 | 0 | 19 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 75.0932 | 68.8312 | 82.6087 | 92.3470 | 530 | 240 | 532 | 112 | 24 | 21.4286 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 83.4019 | 84.2105 | 82.6087 | 94.8081 | 16 | 3 | 19 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.4750 | 95.2381 | 82.6087 | 39.4737 | 20 | 1 | 19 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 82.6087 | 96.5465 | 0 | 0 | 19 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | * | * | * | 83.0264 | 83.4429 | 82.6139 | 57.1178 | 287491 | 57045 | 327755 | 68976 | 51941 | 75.3030 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.2639 | 78.0371 | 82.6214 | 55.4597 | 3109 | 875 | 3114 | 655 | 601 | 91.7557 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 53.9043 | 40.0000 | 82.6255 | 84.1880 | 216 | 324 | 214 | 45 | 36 | 80.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| ciseli-custom | SNP | tv | map_l150_m2_e0 | * | 76.6548 | 71.4839 | 82.6322 | 82.1021 | 8117 | 3238 | 8112 | 1705 | 399 | 23.4018 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.5091 | 84.3949 | 82.6418 | 67.4764 | 1060 | 196 | 1195 | 251 | 203 | 80.8765 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6667 | 96.5181 | 0 | 0 | 62 | 13 | 4 | 30.7692 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | het | 88.3685 | 94.9153 | 82.6667 | 49.3243 | 56 | 3 | 62 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | I1_5 | * | het | 89.2130 | 96.8839 | 82.6678 | 61.9450 | 76578 | 2463 | 82223 | 17239 | 13345 | 77.4117 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.1184 | 79.6209 | 82.6733 | 50.0000 | 168 | 43 | 167 | 35 | 34 | 97.1429 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 84.6774 | 86.7769 | 82.6772 | 96.9287 | 105 | 16 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 84.3373 | 86.0656 | 82.6772 | 96.9962 | 105 | 17 | 105 | 22 | 2 | 9.0909 | |
| anovak-vg | INDEL | * | func_cds | * | 81.4334 | 80.2247 | 82.6790 | 38.5816 | 357 | 88 | 358 | 75 | 54 | 72.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.8820 | 96.0769 | 82.6897 | 71.8992 | 1200 | 49 | 1199 | 251 | 105 | 41.8327 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.8820 | 96.0769 | 82.6897 | 71.8992 | 1200 | 49 | 1199 | 251 | 105 | 41.8327 | |