PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41001-41050 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 80.4348 | 78.7234 | 82.2222 | 94.5189 | 37 | 10 | 37 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.8266 | 96.5799 | 82.2256 | 51.6201 | 15221 | 539 | 16108 | 3482 | 3306 | 94.9454 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.2326 | 82.2222 | 82.2430 | 78.7698 | 111 | 24 | 88 | 19 | 18 | 94.7368 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.6222 | 79.0628 | 82.2442 | 83.6336 | 7964 | 2109 | 8143 | 1758 | 1536 | 87.3720 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1930 | 97.4227 | 82.2454 | 94.1018 | 1890 | 50 | 1890 | 408 | 18 | 4.4118 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.7139 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | het | 76.6159 | 71.6981 | 82.2581 | 99.2102 | 38 | 15 | 51 | 11 | 6 | 54.5455 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.8268 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | * | 87.2111 | 92.7869 | 82.2674 | 98.0750 | 283 | 22 | 283 | 61 | 12 | 19.6721 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4064 | 90.9774 | 82.2727 | 51.2195 | 363 | 36 | 362 | 78 | 78 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.1203 | 97.1933 | 82.2855 | 70.9397 | 2424 | 70 | 2369 | 510 | 8 | 1.5686 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.2821 | 100.0000 | 82.2857 | 92.5373 | 1 | 0 | 144 | 31 | 9 | 29.0323 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | * | 47.5699 | 33.4544 | 82.2913 | 80.2109 | 2672 | 5315 | 2672 | 575 | 501 | 87.1304 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6921 | 93.8506 | 82.2921 | 78.6557 | 9096 | 596 | 8997 | 1936 | 140 | 7.2314 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | hetalt | 55.6197 | 42.0046 | 82.2940 | 85.5161 | 725 | 1001 | 739 | 159 | 112 | 70.4403 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | * | 76.2235 | 70.9861 | 82.2954 | 80.7468 | 7746 | 3166 | 7744 | 1666 | 387 | 23.2293 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | homalt | 78.9120 | 75.7928 | 82.2989 | 88.6021 | 717 | 229 | 716 | 154 | 111 | 72.0779 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 89.8669 | 98.9627 | 82.3024 | 91.9768 | 477 | 5 | 479 | 103 | 4 | 3.8835 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | het | 89.7345 | 98.6381 | 82.3052 | 92.4436 | 507 | 7 | 507 | 109 | 20 | 18.3486 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.8551 | 98.9247 | 82.3088 | 71.2571 | 1748 | 19 | 1754 | 377 | 114 | 30.2387 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 36.7443 | 23.6507 | 82.3171 | 53.0758 | 872 | 2815 | 810 | 174 | 64 | 36.7816 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 89.5152 | 98.0903 | 82.3188 | 67.4835 | 565 | 11 | 568 | 122 | 117 | 95.9016 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 58.8151 | 45.7510 | 82.3221 | 66.0165 | 2778 | 3294 | 3772 | 810 | 398 | 49.1358 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | het | 89.6492 | 98.3951 | 82.3311 | 88.9834 | 797 | 13 | 1109 | 238 | 111 | 46.6387 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.9267 | 99.0645 | 82.3323 | 76.8153 | 2118 | 20 | 2111 | 453 | 345 | 76.1589 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.7492 | 96.2428 | 82.3383 | 73.2890 | 333 | 13 | 331 | 71 | 64 | 90.1408 | |
| mlin-fermikit | INDEL | I16_PLUS | * | het | 86.1646 | 90.3606 | 82.3411 | 68.6094 | 2456 | 262 | 2448 | 525 | 508 | 96.7619 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.4994 | 78.7352 | 82.3445 | 83.8017 | 7931 | 2142 | 8036 | 1723 | 1538 | 89.2629 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 82.3529 | 96.3830 | 0 | 0 | 14 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 58.5774 | 45.4545 | 82.3529 | 96.9203 | 20 | 24 | 14 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 97.1138 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.7433 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.7495 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4706 | 64.7059 | 82.3529 | 96.0465 | 11 | 6 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.3804 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.2902 | 92.8571 | 82.3529 | 94.3333 | 13 | 1 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 89.6000 | 98.2456 | 82.3529 | 96.3309 | 168 | 3 | 168 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 87.5000 | 93.3333 | 82.3529 | 94.2568 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.6522 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 95.6633 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.4196 | 55.6522 | 82.3529 | 58.1967 | 128 | 102 | 126 | 27 | 19 | 70.3704 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.6862 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |