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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40751-40800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.2745 | 91.6667 | 81.4815 | 78.2258 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2330 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2922 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.0000 | 78.5714 | 81.4815 | 98.3019 | 22 | 6 | 22 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | het | 86.2745 | 91.6667 | 81.4815 | 94.7674 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.7830 | 26.3158 | 81.4815 | 82.9114 | 5 | 14 | 22 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.8378 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | het | 66.0619 | 55.5447 | 81.4921 | 84.3450 | 2274 | 1820 | 2272 | 516 | 182 | 35.2713 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.9582 | 52.6316 | 81.4969 | 78.9220 | 390 | 351 | 392 | 89 | 11 | 12.3596 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.1155 | 32.1540 | 81.5062 | 55.9877 | 2690 | 5676 | 2684 | 609 | 538 | 88.3415 | |
| gduggal-snapplat | INDEL | D6_15 | * | * | 49.9163 | 35.9727 | 81.5114 | 64.7243 | 9386 | 16706 | 8068 | 1830 | 539 | 29.4536 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 88.9998 | 98.0021 | 81.5123 | 84.1232 | 6524 | 133 | 6565 | 1489 | 141 | 9.4694 | |
| gduggal-snapplat | INDEL | * | segdup | het | 76.3682 | 71.8281 | 81.5210 | 97.0363 | 1053 | 413 | 1147 | 260 | 13 | 5.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | het | 88.7208 | 97.3054 | 81.5281 | 85.1064 | 7150 | 198 | 7128 | 1615 | 97 | 6.0062 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | * | 83.4613 | 85.4797 | 81.5359 | 87.6226 | 989 | 168 | 998 | 226 | 83 | 36.7257 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | hetalt | 78.6144 | 75.8929 | 81.5385 | 92.3439 | 85 | 27 | 53 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | * | 83.4201 | 85.3893 | 81.5397 | 87.6090 | 976 | 167 | 985 | 223 | 82 | 36.7713 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.6122 | 99.4536 | 81.5431 | 79.4401 | 546 | 3 | 539 | 122 | 105 | 86.0656 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.6909 | 97.1990 | 81.5523 | 71.2536 | 17351 | 500 | 17263 | 3905 | 147 | 3.7644 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.9438 | 97.7871 | 81.5673 | 65.0094 | 11180 | 253 | 11085 | 2505 | 89 | 3.5529 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.5000 | 73.8095 | 81.5789 | 99.3308 | 31 | 11 | 31 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | het | 81.3293 | 81.0811 | 81.5789 | 88.3436 | 30 | 7 | 31 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1709 | 54.2531 | 81.5900 | 69.4864 | 8451 | 7126 | 8323 | 1878 | 1704 | 90.7348 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 66.8635 | 56.6333 | 81.6046 | 52.1656 | 2207 | 1690 | 1424 | 321 | 304 | 94.7040 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.6622 | 97.0558 | 81.6049 | 51.6846 | 15296 | 464 | 15997 | 3606 | 3454 | 95.7848 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | * | 45.7291 | 31.7641 | 81.6080 | 76.7628 | 2294 | 4928 | 2294 | 517 | 446 | 86.2669 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 59.5931 | 46.9320 | 81.6092 | 83.6389 | 283 | 320 | 284 | 64 | 1 | 1.5625 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.6006 | 96.8987 | 81.6117 | 67.2685 | 1531 | 49 | 1509 | 340 | 6 | 1.7647 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | homalt | 65.2941 | 54.4118 | 81.6176 | 84.1676 | 111 | 93 | 111 | 25 | 23 | 92.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | * | 85.9267 | 90.6977 | 81.6327 | 50.0000 | 39 | 4 | 40 | 9 | 1 | 11.1111 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.6529 | 54.9051 | 81.6327 | 49.3103 | 347 | 285 | 240 | 54 | 29 | 53.7037 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 81.6327 | 95.5046 | 0 | 0 | 40 | 9 | 9 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.1064 | 88.8889 | 81.6327 | 79.4118 | 40 | 5 | 40 | 9 | 5 | 55.5556 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.4646 | 87.5000 | 81.6327 | 96.8161 | 42 | 6 | 40 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002compoundhet | het | 89.1342 | 98.1308 | 81.6487 | 68.8379 | 840 | 16 | 832 | 187 | 185 | 98.9305 | |
| ghariani-varprowl | SNP | * | HG002compoundhet | homalt | 89.8311 | 99.8331 | 81.6508 | 42.6198 | 10764 | 18 | 10773 | 2421 | 2004 | 82.7757 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.3948 | 71.7742 | 81.6514 | 99.9459 | 89 | 35 | 89 | 20 | 12 | 60.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | * | 76.8096 | 72.5099 | 81.6514 | 84.8420 | 5700 | 2161 | 5696 | 1280 | 329 | 25.7031 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | * | 75.4859 | 70.1855 | 81.6523 | 81.6008 | 4654 | 1977 | 4655 | 1046 | 265 | 25.3346 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | homalt | 73.8610 | 67.4221 | 81.6596 | 48.7624 | 18206 | 8797 | 18206 | 4089 | 3913 | 95.6958 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | * | 88.0937 | 95.6255 | 81.6617 | 88.2856 | 1093 | 50 | 1376 | 309 | 102 | 33.0097 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.0162 | 97.8232 | 81.6639 | 77.4026 | 1483 | 33 | 1492 | 335 | 22 | 6.5672 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.3094 | 98.5239 | 81.6710 | 71.7637 | 3404 | 51 | 3431 | 770 | 248 | 32.2078 | |