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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40001-40050 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 23.8140 | 14.0000 | 79.6460 | 57.8358 | 91 | 559 | 90 | 23 | 17 | 73.9130 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 82.2315 | 84.9860 | 79.6499 | 75.4433 | 1817 | 321 | 1820 | 465 | 124 | 26.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 78.5276 | 77.4194 | 79.6680 | 89.5354 | 192 | 56 | 192 | 49 | 40 | 81.6327 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | het | 87.7147 | 97.5514 | 79.6800 | 90.8905 | 996 | 25 | 996 | 254 | 63 | 24.8031 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.8315 | 84.1019 | 79.6804 | 71.0030 | 693 | 131 | 698 | 178 | 114 | 64.0449 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.8877 | 86.3510 | 79.6915 | 44.5869 | 310 | 49 | 310 | 79 | 52 | 65.8228 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.9712 | 95.7121 | 79.6933 | 69.9711 | 29442 | 1319 | 49260 | 12552 | 12425 | 98.9882 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 51.3343 | 37.8608 | 79.6954 | 89.2663 | 446 | 732 | 471 | 120 | 38 | 31.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | * | 63.7181 | 53.0736 | 79.7034 | 53.6711 | 872 | 771 | 860 | 219 | 154 | 70.3196 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.2391 | 93.9189 | 79.7203 | 77.1200 | 139 | 9 | 114 | 29 | 29 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | * | 86.9569 | 95.6298 | 79.7263 | 90.1392 | 744 | 34 | 932 | 237 | 56 | 23.6287 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 82.6785 | 85.8537 | 79.7297 | 84.6367 | 176 | 29 | 177 | 45 | 26 | 57.7778 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 82.6785 | 85.8537 | 79.7297 | 84.6367 | 176 | 29 | 177 | 45 | 26 | 57.7778 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9804 | 63.9576 | 79.7357 | 72.0099 | 181 | 102 | 181 | 46 | 33 | 71.7391 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | * | 81.6618 | 83.6820 | 79.7368 | 89.6132 | 600 | 117 | 606 | 154 | 60 | 38.9610 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 79.4104 | 79.0850 | 79.7386 | 67.5159 | 121 | 32 | 122 | 31 | 27 | 87.0968 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.5740 | 97.1061 | 79.7460 | 45.0808 | 302 | 9 | 1193 | 303 | 283 | 93.3993 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 84.6320 | 90.1536 | 79.7478 | 64.8768 | 998 | 109 | 1012 | 257 | 243 | 94.5525 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | het | 69.2403 | 61.1765 | 79.7527 | 88.3612 | 520 | 330 | 516 | 131 | 31 | 23.6641 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | het | 72.7287 | 66.8410 | 79.7539 | 83.7508 | 12911 | 6405 | 12897 | 3274 | 108 | 3.2987 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 67.1528 | 57.9879 | 79.7584 | 80.2389 | 54769 | 39680 | 61674 | 15652 | 4576 | 29.2359 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5028 | 99.3917 | 79.7641 | 72.5419 | 2941 | 18 | 2976 | 755 | 16 | 2.1192 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.7254 | 79.6774 | 79.7735 | 78.1084 | 494 | 126 | 493 | 125 | 119 | 95.2000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 80.7666 | 81.7829 | 79.7753 | 83.9157 | 211 | 47 | 213 | 54 | 46 | 85.1852 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 63.5703 | 52.8321 | 79.7871 | 32.1688 | 3134 | 2798 | 11092 | 2810 | 2788 | 99.2171 | |
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | * | 87.2093 | 96.1538 | 79.7872 | 98.4545 | 75 | 3 | 75 | 19 | 1 | 5.2632 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 78.3674 | 76.9841 | 79.8013 | 72.5330 | 485 | 145 | 482 | 122 | 85 | 69.6721 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 76.6782 | 73.7705 | 79.8246 | 69.7613 | 90 | 32 | 91 | 23 | 19 | 82.6087 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | * | 87.0891 | 95.8060 | 79.8261 | 90.0965 | 731 | 32 | 918 | 232 | 55 | 23.7069 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 63.9710 | 53.3687 | 79.8301 | 38.1774 | 705 | 616 | 2632 | 665 | 660 | 99.2481 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 88.8000 | 100.0000 | 79.8561 | 97.0394 | 111 | 0 | 111 | 28 | 1 | 3.5714 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 78.7671 | 77.7027 | 79.8611 | 87.8069 | 115 | 33 | 115 | 29 | 24 | 82.7586 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | * | 84.0947 | 88.8016 | 79.8617 | 69.2688 | 64295 | 8108 | 63514 | 16016 | 3537 | 22.0842 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.7614 | 75.7576 | 79.8742 | 91.5962 | 125 | 40 | 127 | 32 | 21 | 65.6250 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.7660 | 81.6777 | 79.8745 | 42.7070 | 3330 | 747 | 3310 | 834 | 461 | 55.2758 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | * | 86.8868 | 95.2476 | 79.8754 | 91.6627 | 4770 | 238 | 4743 | 1195 | 72 | 6.0251 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | * | 80.9550 | 82.0565 | 79.8828 | 90.2159 | 407 | 89 | 409 | 103 | 43 | 41.7476 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9441 | 95.3611 | 79.8924 | 72.5785 | 1624 | 79 | 1633 | 411 | 364 | 88.5645 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.1251 | 98.2495 | 79.8925 | 44.0994 | 2245 | 40 | 2229 | 561 | 501 | 89.3048 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.8176 | 66.8723 | 79.9231 | 50.7780 | 1843 | 913 | 1871 | 470 | 429 | 91.2766 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8412 | 97.4766 | 79.9394 | 76.0835 | 1352 | 35 | 1319 | 331 | 6 | 1.8127 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.5397 | 81.1435 | 79.9449 | 69.9648 | 1476 | 343 | 1160 | 291 | 202 | 69.4158 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.5397 | 81.1435 | 79.9449 | 69.9648 | 1476 | 343 | 1160 | 291 | 202 | 69.4158 | |