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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 790 791 792 793 794 795 796 797 798 ... 1720 1721 » 39651-39700 / 86044 show all
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	20.2441	11.6279	78.1609	81.2903	70	532	68	19	19	100.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	20.2441	11.6279	78.1609	81.2095	70	532	68	19	19	100.0000
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	84.4639	91.8699	78.1629	66.9151	452	40	451	126	119	94.4444
eyeh-varpipe	INDEL	D16_PLUS	map_l100_m2_e0	*	58.4466	46.6667	78.1818	86.7150	42	48	43	12	12	100.0000
dgrover-gatk	INDEL	D16_PLUS	map_l100_m2_e0	het	85.2611	93.7500	78.1818	96.1295	45	3	43	12	4	33.3333
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e0	het	84.3889	91.6667	78.1818	96.3648	44	4	43	12	4	33.3333
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	54.0864	41.3442	78.1818	30.8176	203	288	86	24	6	25.0000
mlin-fermikit	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	61.1726	50.2392	78.1885	71.6457	420	416	423	118	117	99.1525
gduggal-bwavard	INDEL	D6_15	HG002complexvar	*	76.1590	74.2173	78.2051	56.8522	3935	1367	3782	1054	954	90.5123
anovak-vg	INDEL	D1_5	map_l100_m0_e0	het	82.2817	86.8020	78.2090	87.2186	513	78	524	146	51	34.9315
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.0232	98.0670	78.2151	83.4802	28157	555	28299	7882	82	1.0404
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.0232	98.0670	78.2151	83.4802	28157	555	28299	7882	82	1.0404
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	75.9304	73.7693	78.2218	69.0738	48209	17142	62008	17264	16584	96.0612
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	75.9304	73.7693	78.2218	69.0738	48209	17142	62008	17264	16584	96.0612
ciseli-custom	INDEL	*	map_siren	homalt	73.0250	68.4746	78.2234	81.7056	1818	837	1814	505	387	76.6337
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	87.6552	99.6678	78.2269	51.0842	600	2	600	167	166	99.4012
ghariani-varprowl	INDEL	I6_15	segdup	*	72.0984	66.8571	78.2313	93.2039	117	58	115	32	32	100.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.8814	39.9386	78.2347	54.0553	780	1173	780	217	203	93.5484
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	68.6210	61.1111	78.2353	64.0592	132	84	133	37	35	94.5946
jpowers-varprowl	INDEL	*	tech_badpromoters	*	74.4828	71.0526	78.2609	53.6913	54	22	54	15	15	100.0000
jpowers-varprowl	INDEL	I16_PLUS	segdup	het	76.5957	75.0000	78.2609	93.5393	18	6	18	5	5	100.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	68.5714	61.0169	78.2609	60.6838	36	23	36	10	9	90.0000
cchapple-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	0.0000	0.0000	78.2609	96.7537	0	0	72	20	0	0.0000
qzeng-custom	INDEL	I16_PLUS	segdup	homalt	87.8049	100.0000	78.2609	90.9091	19	0	18	5	1	20.0000
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	55.3846	42.8571	78.2609	99.2474	18	24	18	5	5	100.0000
anovak-vg	SNP	tv	map_l100_m1_e0	*	83.4211	89.3066	78.2634	70.1430	21881	2620	21848	6068	1313	21.6381
gduggal-bwavard	INDEL	D16_PLUS	HG002complexvar	*	75.2016	72.3676	78.2666	64.6225	1189	454	1192	331	268	80.9668
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	*	52.2963	39.2666	78.2675	62.9505	514	795	515	143	46	32.1678
gduggal-snapplat	INDEL	D6_15	HG002complexvar	homalt	52.8983	39.9487	78.2700	68.0162	467	702	371	103	66	64.0777
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	81.9075	85.8815	78.2851	78.2609	3376	555	3378	937	16	1.7076
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	83.5759	89.6241	78.2925	40.0872	1192	138	1183	328	283	86.2805
gduggal-snapplat	INDEL	I6_15	HG002compoundhet	*	49.4889	36.1782	78.2955	43.1184	3175	5601	3142	871	568	65.2124
anovak-vg	INDEL	D1_5	map_l150_m0_e0	*	78.5978	78.8927	78.3051	93.2168	228	61	231	64	29	45.3125
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	80.2108	82.2072	78.3091	58.4509	1095	237	1130	313	202	64.5367
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	0.0000	0.0000	78.3217	96.5283	0	1	112	31	4	12.9032
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	0.0000	0.0000	78.3217	96.5283	0	1	112	31	4	12.9032
ciseli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.4138	96.3627	78.3270	66.2442	16929	639	17004	4705	98	2.0829
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	85.6607	94.4974	78.3354	70.0293	1288	75	1280	354	318	89.8305
egarrison-hhga	INDEL	*	HG002compoundhet	*	77.4600	76.5788	78.3617	71.3882	22943	7017	23485	6485	6131	94.5412
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	79.2090	80.0667	78.3696	91.0972	8648	2153	8681	2396	141	5.8848
anovak-vg	INDEL	D6_15	map_l125_m1_e0	*	75.8631	73.5043	78.3784	88.8554	86	31	87	24	15	62.5000
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	74.2102	70.4505	78.3938	47.6036	8366	3509	8356	2303	2257	98.0026
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	76.9105	75.4795	78.3969	40.0251	5470	1777	5614	1547	1192	77.0524
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	54.9072	42.2449	78.4091	85.8369	207	283	207	57	28	49.1228
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	77.4069	76.4295	78.4096	44.8000	9076	2799	9239	2544	1839	72.2877
gduggal-snapvard	INDEL	I1_5	map_l150_m2_e0	het	87.3970	98.7055	78.4133	92.5365	305	4	425	117	42	35.8974
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	44.9438	31.4961	78.4314	66.6667	40	87	40	11	11	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	44.9438	31.4961	78.4314	66.6667	40	87	40	11	11	100.0000
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	83.4460	89.1304	78.4431	93.1585	246	30	262	72	4	5.5556
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	77.9189	77.3944	78.4506	71.4753	2804	819	2876	790	545	68.9873

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