PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39501-39550 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.4101 | 90.0498 | 77.6824 | 80.0684 | 181 | 20 | 181 | 52 | 41 | 78.8462 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | * | 85.6069 | 95.3199 | 77.6904 | 91.0746 | 6884 | 338 | 6815 | 1957 | 96 | 4.9055 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | * | 75.5337 | 73.4774 | 77.7083 | 86.7293 | 374 | 135 | 373 | 107 | 94 | 87.8505 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.3920 | 94.7368 | 77.7251 | 93.0040 | 144 | 8 | 164 | 47 | 4 | 8.5106 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 77.5375 | 77.3507 | 77.7253 | 87.2862 | 2435 | 713 | 2467 | 707 | 54 | 7.6379 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.0372 | 53.0172 | 77.7273 | 49.0151 | 246 | 218 | 342 | 98 | 96 | 97.9592 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 74.6510 | 71.8045 | 77.7324 | 73.3424 | 1528 | 600 | 1522 | 436 | 398 | 91.2844 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | * | 87.4786 | 100.0000 | 77.7439 | 86.1311 | 4 | 0 | 255 | 73 | 32 | 43.8356 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.6795 | 97.9333 | 77.7454 | 76.6397 | 2938 | 62 | 2938 | 841 | 597 | 70.9869 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | homalt | 78.9714 | 80.2306 | 77.7510 | 38.7303 | 974 | 240 | 968 | 277 | 275 | 99.2780 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 59.3370 | 47.9747 | 77.7515 | 66.6856 | 5697 | 6178 | 8230 | 2355 | 819 | 34.7771 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.0796 | 53.0658 | 77.7518 | 54.5745 | 476 | 421 | 332 | 95 | 46 | 48.4211 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | het | 77.7778 | 77.7778 | 77.7778 | 82.3529 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 93.2836 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2381 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 93.4307 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | homalt | 75.0000 | 72.4138 | 77.7778 | 88.7500 | 21 | 8 | 21 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 71.7949 | 66.6667 | 77.7778 | 99.3080 | 10 | 5 | 14 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I6_15 | func_cds | homalt | 84.8485 | 93.3333 | 77.7778 | 25.0000 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.6364 | 53.8462 | 77.7778 | 71.8750 | 7 | 6 | 7 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | * | 42.4242 | 29.1667 | 77.7778 | 95.4315 | 7 | 17 | 7 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | * | 62.3288 | 52.0000 | 77.7778 | 89.1566 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | * | 62.3288 | 52.0000 | 77.7778 | 90.8629 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 78.8732 | 80.0000 | 77.7778 | 88.7967 | 20 | 5 | 21 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.3953 | 85.3659 | 77.7778 | 82.8244 | 35 | 6 | 35 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.0000 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 91.2621 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 91.4286 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 94.7977 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 92.6829 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.8525 | 61.7647 | 77.7778 | 97.8947 | 42 | 26 | 42 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 77.7778 | 97.8365 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.7778 | 96.2810 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | homalt | 82.3529 | 87.5000 | 77.7778 | 62.5000 | 7 | 1 | 7 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | het | 84.4828 | 92.4528 | 77.7778 | 98.7390 | 49 | 4 | 49 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 95.3728 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.6623 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1154 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.5047 | 79.2453 | 77.7778 | 68.2353 | 42 | 11 | 42 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8485 | 93.3333 | 77.7778 | 96.5583 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.7778 | 96.3415 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 89.2857 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.1099 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 90.3226 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |