PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38901-38950 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.1429 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.7401 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.8610 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.9487 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.0198 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 70.5882 | 66.6667 | 75.0000 | 96.9582 | 6 | 3 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 98.2533 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.4528 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 35.2941 | 23.0769 | 75.0000 | 69.2308 | 3 | 10 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | hetalt | 60.2641 | 50.3679 | 75.0000 | 58.1818 | 616 | 607 | 207 | 69 | 66 | 95.6522 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 48.7085 | 36.0656 | 75.0000 | 57.8947 | 22 | 39 | 12 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.9756 | 28.1879 | 75.0000 | 50.6849 | 42 | 107 | 81 | 27 | 27 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.4778 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.5338 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 81.8182 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.2117 | 93.4426 | 75.0000 | 70.8955 | 114 | 8 | 117 | 39 | 37 | 94.8718 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 100.0000 | 75.0000 | 97.3684 | 9 | 0 | 9 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.0000 | 75.0000 | 75.0000 | 97.8349 | 12 | 4 | 12 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.1911 | 18.8995 | 75.0000 | 65.9016 | 79 | 339 | 78 | 26 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 37.5000 | 25.0000 | 75.0000 | 89.7436 | 3 | 9 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | hetalt | 80.0000 | 85.7143 | 75.0000 | 81.3953 | 12 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 87.3016 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 54.5455 | 42.8571 | 75.0000 | 89.1892 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 54.5455 | 42.8571 | 75.0000 | 88.2353 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 33.3333 | 21.4286 | 75.0000 | 94.0299 | 3 | 11 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 30.0000 | 18.7500 | 75.0000 | 95.0617 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 30.0000 | 18.7500 | 75.0000 | 95.1220 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | het | 85.7143 | 100.0000 | 75.0000 | 99.9649 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 75.0000 | 99.9757 | 0 | 1 | 21 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | het | 80.0000 | 85.7143 | 75.0000 | 62.5000 | 6 | 1 | 9 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.2793 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.3344 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | * | 38.1503 | 25.5814 | 75.0000 | 63.6364 | 11 | 32 | 6 | 2 | 0 | 0.0000 | |