PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38201-38250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.0548 | 89.0909 | 72.6829 | 91.6052 | 147 | 18 | 149 | 56 | 9 | 16.0714 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.9546 | 88.8056 | 72.7080 | 46.5949 | 9242 | 1165 | 9596 | 3602 | 1710 | 47.4736 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.1577 | 77.7747 | 72.7110 | 36.3946 | 2845 | 813 | 4074 | 1529 | 1142 | 74.6893 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.5652 | 66.6667 | 72.7273 | 99.4295 | 38 | 19 | 40 | 15 | 9 | 60.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 75.5556 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | * | 71.3819 | 70.0855 | 72.7273 | 85.2349 | 82 | 35 | 128 | 48 | 32 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | homalt | 73.8462 | 75.0000 | 72.7273 | 91.6667 | 6 | 2 | 8 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 24.6154 | 14.8148 | 72.7273 | 60.7143 | 16 | 92 | 16 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 80.0000 | 88.8889 | 72.7273 | 89.9083 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 76.0870 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 97.1354 | 0 | 0 | 24 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | * | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | hetalt | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.7273 | 85.2018 | 0 | 0 | 24 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 94.2105 | 0 | 0 | 8 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | * | 69.5652 | 66.6667 | 72.7273 | 47.6190 | 8 | 4 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 45.0000 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 61.5385 | 53.3333 | 72.7273 | 92.3077 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 61.5385 | 53.3333 | 72.7273 | 93.3535 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 61.5385 | 53.3333 | 72.7273 | 93.5103 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.1905 | 80.0000 | 72.7273 | 99.5621 | 8 | 2 | 8 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 70.1273 | 67.6890 | 72.7479 | 71.4311 | 3465 | 1654 | 3529 | 1322 | 311 | 23.5250 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.5113 | 95.2894 | 72.7551 | 82.9109 | 3095 | 153 | 3095 | 1159 | 30 | 2.5884 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | het | 68.9335 | 65.4925 | 72.7562 | 91.5977 | 911 | 480 | 916 | 343 | 203 | 59.1837 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.3978 | 74.0332 | 72.7731 | 56.7536 | 14703 | 5157 | 14714 | 5505 | 3111 | 56.5123 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 66.7396 | 61.6216 | 72.7848 | 97.3275 | 114 | 71 | 115 | 43 | 14 | 32.5581 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | * | 66.5172 | 61.2403 | 72.7891 | 82.3635 | 158 | 100 | 214 | 80 | 56 | 70.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | * | 72.9884 | 73.1707 | 72.8070 | 88.6680 | 60 | 22 | 83 | 31 | 20 | 64.5161 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | het | 70.6166 | 68.5393 | 72.8236 | 88.9382 | 915 | 420 | 962 | 359 | 95 | 26.4624 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 44.4700 | 32.0066 | 72.8302 | 65.6291 | 193 | 410 | 193 | 72 | 61 | 84.7222 | |
| anovak-vg | INDEL | * | map_siren | * | 72.9885 | 73.1309 | 72.8467 | 79.6324 | 5419 | 1991 | 5489 | 2046 | 1378 | 67.3509 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.3964 | 87.2325 | 72.8520 | 53.8546 | 2446 | 358 | 2442 | 910 | 909 | 99.8901 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | homalt | 53.4856 | 42.2526 | 72.8541 | 73.1257 | 679 | 928 | 679 | 253 | 229 | 90.5138 | |