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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 760 761 762 763 764 765 766 767 768 ... 1720 1721 » 38151-38200 / 86044 show all
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	69.3384	66.5414	72.3810	85.5372	177	89	152	58	39	67.2414
mlin-fermikit	SNP	tv	map_l125_m1_e0	homalt	63.9810	57.3208	72.3922	52.9173	3359	2501	3359	1281	1204	93.9891
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	73.1367	73.8749	72.4131	44.0488	4974	1759	7145	2722	2236	82.1455
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	37.5633	25.3589	72.4138	74.4493	53	156	42	16	3	18.7500
ghariani-varprowl	INDEL	D6_15	segdup	*	69.3267	66.4921	72.4138	94.6180	127	64	126	48	46	95.8333
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	72.9167	73.4266	72.4138	93.7392	105	38	105	40	29	72.5000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	83.1683	97.6744	72.4138	74.4493	42	1	42	16	14	87.5000
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	het	80.8415	91.4894	72.4138	94.0574	43	4	21	8	8	100.0000
gduggal-snapvard	SNP	ti	map_l250_m2_e0	het	82.6056	96.1278	72.4186	92.5288	3128	126	3114	1186	65	5.4806
gduggal-bwavard	INDEL	I6_15	map_siren	*	68.6489	65.2459	72.4265	84.2319	199	106	197	75	64	85.3333
anovak-vg	SNP	*	map_l100_m2_e1	het	80.7046	91.1126	72.4307	73.6475	42730	4168	42251	16082	3449	21.4463
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	82.4169	95.5954	72.4316	76.0055	43689	2013	43987	16742	965	5.7640
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	82.4169	95.5954	72.4316	76.0055	43689	2013	43987	16742	965	5.7640
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	43.7439	31.3305	72.4490	90.3733	73	160	71	27	10	37.0370
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	69.6812	67.0967	72.4727	44.4064	25431	12471	36677	13931	13653	98.0045
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	58.9524	49.6815	72.4771	51.3393	78	79	79	30	29	96.6667
gduggal-snapvard	SNP	ti	HG002compoundhet	het	77.4625	83.1755	72.4839	53.3720	7905	1599	9096	3453	1426	41.2974
hfeng-pmm3	INDEL	I1_5	HG002compoundhet	homalt	83.8462	99.3921	72.5055	83.0068	327	2	327	124	123	99.1935
gduggal-bwavard	INDEL	*	map_l150_m0_e0	het	83.4371	98.2405	72.5108	94.3348	335	6	335	127	22	17.3228
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	73.0417	73.5632	72.5275	81.8363	64	23	66	25	17	68.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	63.3305	56.2021	72.5296	71.5411	367	286	367	139	118	84.8921
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	37.1926	25.0079	72.5332	64.8432	1581	4741	1529	579	94	16.2349
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	37.1926	25.0079	72.5332	64.8432	1581	4741	1529	579	94	16.2349
mlin-fermikit	INDEL	D1_5	map_l250_m2_e0	homalt	66.6667	61.6667	72.5490	90.0391	37	23	37	14	14	100.0000
mlin-fermikit	INDEL	D1_5	map_l250_m2_e1	homalt	66.6667	61.6667	72.5490	90.4315	37	23	37	14	14	100.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	77.5681	83.3333	72.5490	91.3413	35	7	37	14	7	50.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	81.7107	93.5185	72.5504	85.4033	1212	84	1007	381	58	15.2231
ghariani-varprowl	INDEL	I6_15	segdup	het	83.2383	97.5904	72.5664	93.7844	81	2	82	31	31	100.0000
mlin-fermikit	INDEL	D1_5	map_l150_m2_e1	homalt	70.9278	69.3548	72.5738	81.4699	172	76	172	65	60	92.3077
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	69.4218	66.5306	72.5758	57.3368	489	246	479	181	180	99.4475
ciseli-custom	INDEL	*	map_l125_m1_e0	het	68.7565	65.3184	72.5766	91.1620	872	463	876	331	196	59.2145
gduggal-snapfb	SNP	*	HG002compoundhet	*	83.3987	98.0094	72.5790	48.5976	25308	514	25579	9664	581	6.0120
qzeng-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	81.1561	92.0082	72.5938	67.9226	449	39	445	168	63	37.5000
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	80.3030	89.8305	72.6027	74.2049	53	6	53	20	19	95.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.6842	98.7578	72.6027	36.7052	159	2	159	60	60	100.0000
gduggal-snapvard	SNP	ti	map_l250_m2_e1	het	82.7367	96.1200	72.6248	92.6041	3171	128	3157	1190	66	5.5462
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	77.9866	84.1808	72.6415	67.5841	149	28	154	58	58	100.0000
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	83.1927	97.3270	72.6431	60.4890	2476	68	2512	946	9	0.9514
gduggal-snapfb	INDEL	*	HG002complexvar	hetalt	65.6662	59.9081	72.6490	79.8155	2216	1483	1097	413	281	68.0387
anovak-vg	INDEL	I1_5	segdup	het	40.6839	28.2528	72.6496	97.2794	152	386	170	64	21	32.8125
ciseli-custom	INDEL	I1_5	map_siren	*	68.4975	64.7920	72.6525	80.4862	1947	1058	1942	731	614	83.9945
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	69.0612	65.8068	72.6543	37.5809	16149	8391	16741	6301	4632	73.5121
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	79.1991	87.0370	72.6562	76.5138	94	14	93	35	35	100.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	60.4024	51.6854	72.6562	71.4922	92	86	93	35	35	100.0000
gduggal-snapfb	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.6868	98.6611	72.6589	66.9839	17612	239	17869	6724	214	3.1826
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.1458	27.7350	72.6592	88.8238	180	469	194	73	28	38.3562
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	78.5739	85.5355	72.6602	82.1649	2324	393	2756	1037	513	49.4696
ciseli-custom	INDEL	*	map_l125_m0_e0	*	65.7143	59.9773	72.6648	92.6716	529	353	529	199	111	55.7789
gduggal-bwavard	INDEL	I6_15	segdup	*	68.6994	65.1429	72.6667	92.8605	114	61	109	41	40	97.5610
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.2248	49.9739	72.6787	68.3719	5739	5745	7342	2760	1993	72.2101

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