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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 759 760 761 762 763 764 765 766 767 ... 1720 1721 » 38101-38150 / 86044 show all
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	65.4311	59.8361	72.1805	46.5863	73	49	96	37	37	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	64.7519	58.7097	72.1805	82.7048	91	64	96	37	36	97.2973
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	78.6552	86.4019	72.1833	72.7812	5547	873	5561	2143	2067	96.4536
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	78.6552	86.4019	72.1833	72.7812	5547	873	5561	2143	2067	96.4536
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	47.0793	34.9282	72.1951	63.7809	146	272	148	57	56	98.2456
gduggal-snapvard	INDEL	*	map_l150_m2_e1	het	82.4518	96.1039	72.1960	92.0188	888	36	1223	471	147	31.2102
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	64.2360	57.8454	72.2140	63.0306	10562	7697	13647	5251	3074	58.5412
ciseli-custom	SNP	tv	map_l250_m1_e0	*	65.7644	60.3702	72.2172	91.9134	1598	1049	1596	614	128	20.8469
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.0202	97.6165	72.2212	39.7852	7208	176	7693	2959	2890	97.6681
qzeng-custom	INDEL	D6_15	map_l250_m1_e0	*	66.2037	61.1111	72.2222	98.0456	11	7	13	5	2	40.0000
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	0.0000	0.0000	72.2222	96.5714	0	0	13	5	2	40.0000
cchapple-custom	INDEL	D16_PLUS	map_l100_m2_e0	homalt	76.4706	81.2500	72.2222	91.8552	13	3	13	5	2	40.0000
cchapple-custom	INDEL	D16_PLUS	map_l100_m2_e1	homalt	76.4706	81.2500	72.2222	91.8919	13	3	13	5	2	40.0000
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	13.1980	7.2626	72.2222	76.0000	13	166	13	5	4	80.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	26.6325	16.3265	72.2222	65.3846	8	41	13	5	5	100.0000
gduggal-snapplat	SNP	*	map_l100_m0_e0	hetalt	76.4706	81.2500	72.2222	85.4839	13	3	13	5	5	100.0000
gduggal-snapplat	SNP	tv	map_l100_m0_e0	hetalt	76.4706	81.2500	72.2222	85.4839	13	3	13	5	5	100.0000
gduggal-snapvard	INDEL	C6_15	HG002complexvar	homalt	0.0000	0.0000	72.2222	75.4768	0	0	65	25	21	84.0000
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	80.3252	90.4762	72.2222	91.7808	38	4	39	15	2	13.3333
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	het	57.7778	48.1481	72.2222	96.3710	13	14	13	5	0	0.0000
ltrigg-rtg2	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	0.0000	0.0000	72.2222	95.4315	0	0	13	5	1	20.0000
jpowers-varprowl	INDEL	D1_5	tech_badpromoters	*	70.2703	68.4211	72.2222	45.4545	13	6	13	5	5	100.0000
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	69.3333	66.6667	72.2222	89.6254	34	17	26	10	3	30.0000
gduggal-snapfb	INDEL	*	tech_badpromoters	het	66.4537	61.5385	72.2222	55.0000	24	15	26	10	0	0.0000
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	65.0000	59.0909	72.2222	68.4211	13	9	13	5	5	100.0000
jlack-gatk	INDEL	I1_5	map_l250_m0_e0	het	78.7879	86.6667	72.2222	98.9018	13	2	13	5	0	0.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	76.4706	81.2500	72.2222	99.8592	13	3	13	5	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m1_e0	homalt	78.7879	86.6667	72.2222	94.9861	13	2	13	5	2	40.0000
anovak-vg	INDEL	I6_15	func_cds	het	56.0784	45.8333	72.2222	40.0000	11	13	13	5	3	60.0000
anovak-vg	INDEL	I6_15	map_l125_m1_e0	homalt	78.7879	86.6667	72.2222	87.0504	13	2	13	5	4	80.0000
anovak-vg	INDEL	I6_15	map_l125_m2_e0	homalt	78.7879	86.6667	72.2222	89.0244	13	2	13	5	4	80.0000
anovak-vg	INDEL	I6_15	map_l125_m2_e1	homalt	78.7879	86.6667	72.2222	89.3491	13	2	13	5	4	80.0000
eyeh-varpipe	INDEL	I6_15	*	homalt	77.6886	84.0359	72.2329	34.4939	5243	996	5273	2027	2012	99.2600
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	81.7737	94.2085	72.2388	51.3788	244	15	242	93	93	100.0000
jli-custom	INDEL	I1_5	HG002compoundhet	homalt	83.7803	99.6960	72.2467	88.6301	328	1	328	126	125	99.2063
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	62.8380	55.5936	72.2533	62.8887	487	389	388	149	145	97.3154
qzeng-custom	INDEL	D16_PLUS	HG002complexvar	homalt	82.7833	96.8858	72.2646	69.0795	280	9	284	109	30	27.5229
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	80.6539	91.2376	72.2705	67.9116	3686	354	3912	1501	1377	91.7388
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.4646	98.7578	72.2727	35.4839	159	2	159	61	61	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.4646	98.7578	72.2727	36.0465	159	2	159	61	61	100.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	67.1394	62.6794	72.2826	73.6011	131	78	133	51	50	98.0392
jpowers-varprowl	INDEL	D6_15	segdup	*	67.5255	63.3508	72.2892	93.4978	121	70	120	46	46	100.0000
mlin-fermikit	INDEL	D1_5	map_l150_m2_e0	homalt	70.6131	69.0083	72.2944	81.5052	167	75	167	64	59	92.1875
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	36.8670	24.7423	72.2944	43.7956	96	292	334	128	127	99.2188
anovak-vg	SNP	*	map_l100_m2_e0	het	80.6158	91.0795	72.3085	73.6388	42260	4139	41790	16004	3433	21.4509
anovak-vg	INDEL	*	map_l100_m0_e0	*	72.6539	73.0006	72.3105	87.1262	1141	422	1183	453	264	58.2781
mlin-fermikit	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	79.2712	87.6596	72.3480	57.0624	1236	174	1214	464	433	93.3190
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	76.9641	82.1855	72.3665	61.3081	1790	388	1477	564	505	89.5390
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.7059	58.5106	72.3684	53.7994	110	78	110	42	42	100.0000
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	81.5998	93.5118	72.3797	87.9363	3877	269	3805	1452	65	4.4766

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