PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38051-38100 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 42.6673 | 30.3609 | 71.7500 | 71.1191 | 286 | 656 | 287 | 113 | 96 | 84.9558 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | het | 82.1372 | 96.0385 | 71.7514 | 95.4014 | 897 | 37 | 889 | 350 | 7 | 2.0000 | |
| mlin-fermikit | SNP | * | map_l100_m0_e0 | homalt | 62.9127 | 56.0069 | 71.7609 | 49.3097 | 6508 | 5112 | 6508 | 2561 | 2415 | 94.2991 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | * | 67.3632 | 63.4660 | 71.7703 | 95.4310 | 1355 | 780 | 1350 | 531 | 99 | 18.6441 | |
| jpowers-varprowl | INDEL | I6_15 | HG002complexvar | het | 76.9804 | 82.9299 | 71.8274 | 56.3262 | 1953 | 402 | 1981 | 777 | 772 | 99.3565 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | * | 72.2354 | 72.6157 | 71.8590 | 84.0163 | 2604 | 982 | 2671 | 1046 | 628 | 60.0382 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.9661 | 85.1852 | 71.8750 | 97.8261 | 23 | 4 | 23 | 9 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0167 | 98.2183 | 71.8900 | 39.0410 | 6560 | 119 | 6900 | 2698 | 2648 | 98.1468 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.9101 | 94.2875 | 0 | 0 | 64 | 25 | 24 | 96.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.4625 | 93.8889 | 71.9409 | 88.0905 | 676 | 44 | 682 | 266 | 37 | 13.9098 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.9696 | 38.2775 | 71.9457 | 61.2960 | 160 | 258 | 159 | 62 | 56 | 90.3226 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.8225 | 67.8161 | 71.9512 | 99.9249 | 59 | 28 | 59 | 23 | 15 | 65.2174 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.5897 | 56.9678 | 71.9536 | 70.5077 | 372 | 281 | 372 | 145 | 129 | 88.9655 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | het | 83.0604 | 98.2143 | 71.9577 | 88.5593 | 275 | 5 | 272 | 106 | 86 | 81.1321 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.9414 | 87.4016 | 71.9745 | 49.1909 | 111 | 16 | 113 | 44 | 39 | 88.6364 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 67.4226 | 63.3961 | 71.9952 | 36.3292 | 5996 | 3462 | 6044 | 2351 | 2331 | 99.1493 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | * | 72.2208 | 72.4441 | 71.9990 | 84.9008 | 2721 | 1035 | 2795 | 1087 | 655 | 60.2576 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 43.5045 | 31.1688 | 72.0000 | 59.1837 | 144 | 318 | 144 | 56 | 49 | 87.5000 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | het | 80.4155 | 91.0315 | 72.0169 | 72.1565 | 41291 | 4068 | 40830 | 15865 | 3407 | 21.4749 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002compoundhet | homalt | 83.5249 | 99.3921 | 72.0264 | 83.4186 | 327 | 2 | 327 | 127 | 126 | 99.2126 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | * | 42.6472 | 30.2857 | 72.0588 | 94.2761 | 53 | 122 | 49 | 19 | 2 | 10.5263 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.1375 | 85.3261 | 72.0660 | 79.7424 | 942 | 162 | 1179 | 457 | 238 | 52.0788 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.8084 | 94.5910 | 72.0693 | 83.9601 | 1434 | 82 | 1414 | 548 | 14 | 2.5547 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | homalt | 83.7163 | 99.8524 | 72.0698 | 50.4793 | 3383 | 5 | 3388 | 1313 | 1124 | 85.6055 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 70.1721 | 68.3616 | 72.0812 | 51.2376 | 121 | 56 | 142 | 55 | 50 | 90.9091 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | homalt | 56.8886 | 46.9829 | 72.0875 | 54.0574 | 2110 | 2381 | 2110 | 817 | 761 | 93.1457 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | het | 71.4142 | 70.7506 | 72.0905 | 91.6109 | 641 | 265 | 669 | 259 | 74 | 28.5714 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5695 | 96.6091 | 72.0927 | 44.6474 | 4530 | 159 | 4544 | 1759 | 24 | 1.3644 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | * | 68.8950 | 65.9686 | 72.0930 | 94.5707 | 126 | 65 | 124 | 48 | 48 | 100.0000 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.3613 | 90.7407 | 72.1127 | 50.6259 | 245 | 25 | 256 | 99 | 99 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | * | 72.4393 | 72.7593 | 72.1222 | 84.8313 | 2687 | 1006 | 2763 | 1068 | 640 | 59.9251 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | * | 62.8773 | 55.7315 | 72.1249 | 36.3543 | 4891 | 3885 | 4898 | 1893 | 1888 | 99.7359 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.7559 | 79.7506 | 72.1424 | 75.3616 | 1087 | 276 | 1155 | 446 | 264 | 59.1928 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.6454 | 99.5085 | 72.1445 | 74.1800 | 1822 | 9 | 1857 | 717 | 13 | 1.8131 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | het | 81.0642 | 92.5000 | 72.1448 | 84.9096 | 259 | 21 | 259 | 100 | 93 | 93.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | het | 82.4377 | 96.1369 | 72.1557 | 91.9661 | 871 | 35 | 1205 | 465 | 145 | 31.1828 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.3984 | 90.7602 | 72.1601 | 85.1616 | 776 | 79 | 775 | 299 | 5 | 1.6722 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1649 | 94.3008 | 0 | 0 | 70 | 27 | 25 | 92.5926 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | * | 83.8356 | 100.0000 | 72.1698 | 67.3846 | 157 | 0 | 153 | 59 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | het | 83.2073 | 98.2143 | 72.1785 | 87.9583 | 275 | 5 | 275 | 106 | 94 | 88.6792 | |