PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37451-37500 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | map_l250_m2_e0 | het | 60.1108 | 53.7113 | 68.2415 | 93.5631 | 1042 | 898 | 1040 | 484 | 21 | 4.3388 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.5303 | 57.6923 | 68.2540 | 68.8119 | 15 | 11 | 43 | 20 | 12 | 60.0000 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | homalt | 76.5861 | 87.2046 | 68.2728 | 79.5887 | 1070 | 157 | 1091 | 507 | 474 | 93.4911 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.5216 | 54.3406 | 68.2890 | 64.1858 | 11192 | 9404 | 14564 | 6763 | 3696 | 54.6503 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 69.0860 | 69.8980 | 68.2927 | 72.8277 | 1507 | 649 | 1512 | 702 | 277 | 39.4587 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | homalt | 76.3517 | 86.5633 | 68.2951 | 84.5478 | 670 | 104 | 685 | 318 | 292 | 91.8239 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | homalt | 73.9644 | 80.6338 | 68.3140 | 87.4544 | 229 | 55 | 235 | 109 | 101 | 92.6606 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | het | 62.5646 | 57.7025 | 68.3215 | 96.1752 | 869 | 637 | 867 | 402 | 13 | 3.2338 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.5760 | 87.0968 | 68.3230 | 91.5441 | 108 | 16 | 110 | 51 | 5 | 9.8039 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | * | 73.9754 | 80.6384 | 68.3294 | 91.4956 | 2324 | 558 | 2315 | 1073 | 260 | 24.2311 | |
| ghariani-varprowl | INDEL | I6_15 | * | * | 61.1674 | 55.3640 | 68.3299 | 52.2203 | 13743 | 11080 | 13763 | 6379 | 6287 | 98.5578 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.5476 | 77.2827 | 68.3592 | 65.9014 | 13771 | 4048 | 14661 | 6786 | 3680 | 54.2293 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | homalt | 76.7170 | 87.3910 | 68.3667 | 80.9419 | 1102 | 159 | 1126 | 521 | 485 | 93.0902 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | het | 79.9753 | 96.3287 | 68.3686 | 94.9097 | 551 | 21 | 549 | 254 | 3 | 1.1811 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | het | 60.2121 | 53.7913 | 68.3733 | 93.6004 | 1057 | 908 | 1055 | 488 | 21 | 4.3033 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | * | 74.0862 | 80.7956 | 68.4057 | 91.5330 | 2356 | 560 | 2347 | 1084 | 260 | 23.9852 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.7251 | 92.6829 | 68.4211 | 93.1408 | 38 | 3 | 39 | 18 | 6 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 78.7879 | 92.8571 | 68.4211 | 95.6322 | 13 | 1 | 13 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 71.5596 | 75.0000 | 68.4211 | 65.4545 | 39 | 13 | 39 | 18 | 18 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 72.4338 | 76.9090 | 68.4508 | 62.7083 | 2518 | 756 | 2788 | 1285 | 845 | 65.7588 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | het | 77.2841 | 88.7324 | 68.4524 | 86.1272 | 63 | 8 | 115 | 53 | 35 | 66.0377 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6453 | 92.3929 | 68.4589 | 73.0930 | 44599 | 3672 | 44716 | 20602 | 20414 | 99.0875 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | homalt | 52.9680 | 43.1869 | 68.4770 | 75.7965 | 1160 | 1526 | 1160 | 534 | 494 | 92.5094 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 79.2334 | 93.9527 | 68.5015 | 74.7853 | 18395 | 1184 | 18642 | 8572 | 188 | 2.1932 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 79.2334 | 93.9527 | 68.5015 | 74.7853 | 18395 | 1184 | 18642 | 8572 | 188 | 2.1932 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 41.0970 | 29.3534 | 68.5039 | 74.9565 | 1716 | 4130 | 1479 | 680 | 172 | 25.2941 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 41.0970 | 29.3534 | 68.5039 | 74.9565 | 1716 | 4130 | 1479 | 680 | 172 | 25.2941 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.8716 | 90.2041 | 68.5057 | 80.6495 | 442 | 48 | 298 | 137 | 123 | 89.7810 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | homalt | 53.1320 | 43.3775 | 68.5465 | 76.1343 | 1179 | 1539 | 1179 | 541 | 500 | 92.4214 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | * | 74.3435 | 81.2102 | 68.5475 | 91.2491 | 5865 | 1357 | 5819 | 2670 | 600 | 22.4719 | |
| anovak-vg | INDEL | * | map_l125_m2_e0 | homalt | 76.4959 | 86.5007 | 68.5656 | 84.5197 | 660 | 103 | 674 | 309 | 283 | 91.5858 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 80.2150 | 96.6216 | 68.5714 | 72.6918 | 429 | 15 | 432 | 198 | 191 | 96.4646 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 68.5714 | 93.3712 | 0 | 0 | 24 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | * | 71.6418 | 75.0000 | 68.5714 | 94.8605 | 24 | 8 | 24 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 79.8224 | 95.4545 | 68.5897 | 91.7504 | 105 | 5 | 107 | 49 | 27 | 55.1020 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.2739 | 93.8895 | 68.5957 | 88.9971 | 799 | 52 | 806 | 369 | 43 | 11.6531 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | het | 81.3793 | 100.0000 | 68.6047 | 92.0591 | 60 | 0 | 59 | 27 | 20 | 74.0741 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.3549 | 57.1429 | 68.6131 | 99.8675 | 12 | 9 | 94 | 43 | 39 | 90.6977 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | * | 58.0506 | 50.3033 | 68.6187 | 53.6851 | 1078 | 1065 | 1078 | 493 | 492 | 99.7972 | |
| ciseli-custom | INDEL | D16_PLUS | * | * | 59.6718 | 52.7860 | 68.6237 | 57.6195 | 3581 | 3203 | 3565 | 1630 | 1503 | 92.2086 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | het | 79.3959 | 94.1176 | 68.6567 | 96.4037 | 48 | 3 | 46 | 21 | 3 | 14.2857 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 79.1842 | 93.5216 | 68.6585 | 57.6883 | 563 | 39 | 563 | 257 | 251 | 97.6654 | |