PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37401-37450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.3505 | 92.6829 | 67.8571 | 90.1060 | 38 | 3 | 38 | 18 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.3311 | 40.0000 | 67.8571 | 62.1622 | 14 | 21 | 38 | 18 | 17 | 94.4444 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | het | 77.5666 | 90.5162 | 67.8585 | 78.1432 | 26829 | 2811 | 26551 | 12576 | 2737 | 21.7637 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | het | 61.9329 | 56.9506 | 67.8706 | 93.2521 | 2708 | 2047 | 2706 | 1281 | 41 | 3.2006 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.4973 | 98.8550 | 67.8899 | 84.1240 | 518 | 6 | 518 | 245 | 10 | 4.0816 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | * | 67.1085 | 66.3284 | 67.9072 | 58.7807 | 19872 | 10088 | 19761 | 9339 | 9228 | 98.8114 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 80.5645 | 99.0173 | 67.9091 | 64.2303 | 2519 | 25 | 2569 | 1214 | 25 | 2.0593 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 67.9245 | 95.0188 | 0 | 0 | 36 | 17 | 8 | 47.0588 | |
| ciseli-custom | INDEL | I6_15 | HG002complexvar | * | 36.3268 | 24.7913 | 67.9389 | 56.5783 | 1188 | 3604 | 1157 | 546 | 471 | 86.2637 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0307 | 62.3529 | 67.9487 | 83.1533 | 53 | 32 | 53 | 25 | 21 | 84.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | * | 56.9106 | 48.9510 | 67.9612 | 87.2050 | 70 | 73 | 70 | 33 | 21 | 63.6364 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | homalt | 51.7475 | 41.7783 | 67.9657 | 72.7453 | 1029 | 1434 | 1029 | 485 | 445 | 91.7526 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.3120 | 84.4262 | 67.9739 | 56.5341 | 103 | 19 | 104 | 49 | 49 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 46.1240 | 34.8974 | 68.0000 | 71.9101 | 119 | 222 | 17 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 68.0000 | 99.2789 | 0 | 0 | 17 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 56.1021 | 47.7477 | 68.0000 | 49.7487 | 106 | 116 | 136 | 64 | 26 | 40.6250 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.6919 | 47.1555 | 68.0020 | 66.7689 | 15086 | 16906 | 17977 | 8459 | 3479 | 41.1278 | |
| gduggal-snapvard | SNP | tv | HG002compoundhet | het | 75.6689 | 85.2771 | 68.0065 | 62.2530 | 3985 | 688 | 4585 | 2157 | 1046 | 48.4933 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 52.7157 | 43.0290 | 68.0310 | 66.2410 | 1574 | 2084 | 2194 | 1031 | 178 | 17.2648 | |
| anovak-vg | INDEL | * | map_l100_m2_e1 | homalt | 76.5374 | 87.4317 | 68.0572 | 81.0009 | 1120 | 161 | 1142 | 536 | 499 | 93.0970 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4601 | 31.9182 | 68.0775 | 69.7400 | 2684 | 5725 | 2670 | 1252 | 1202 | 96.0064 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.5638 | 41.4948 | 68.0851 | 72.2550 | 161 | 227 | 160 | 75 | 74 | 98.6667 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | het | 74.4186 | 82.0513 | 68.0851 | 50.5263 | 32 | 7 | 32 | 15 | 15 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 44.8658 | 33.4523 | 68.1013 | 69.9638 | 2813 | 5596 | 2769 | 1297 | 1197 | 92.2899 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.4071 | 98.1366 | 68.1034 | 35.1955 | 158 | 3 | 158 | 74 | 67 | 90.5405 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5694 | 95.6738 | 68.1055 | 61.1370 | 1349 | 61 | 1420 | 665 | 621 | 93.3835 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.6371 | 40.3001 | 68.1066 | 40.7912 | 2310 | 3422 | 6748 | 3160 | 2890 | 91.4557 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | * | 72.4774 | 77.4453 | 68.1085 | 95.7045 | 1061 | 309 | 1055 | 494 | 111 | 22.4696 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 77.5015 | 89.8990 | 68.1090 | 63.2249 | 1958 | 220 | 2125 | 995 | 950 | 95.4774 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8081 | 34.5074 | 68.1144 | 30.9514 | 1205 | 2287 | 4548 | 2129 | 2118 | 99.4833 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.8250 | 53.3333 | 68.1159 | 96.2743 | 48 | 42 | 47 | 22 | 19 | 86.3636 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.2306 | 13.2826 | 68.1223 | 82.0392 | 157 | 1025 | 156 | 73 | 59 | 80.8219 | |
| anovak-vg | SNP | ti | map_l125_m2_e0 | het | 77.5170 | 89.8919 | 68.1370 | 78.1191 | 16968 | 1908 | 16853 | 7881 | 1719 | 21.8120 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.7448 | 96.1003 | 68.1467 | 47.3577 | 345 | 14 | 353 | 165 | 141 | 85.4545 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 76.2662 | 86.5448 | 68.1700 | 55.3642 | 5255 | 817 | 5230 | 2442 | 2103 | 86.1179 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.9578 | 85.7513 | 68.1720 | 92.2629 | 331 | 55 | 317 | 148 | 24 | 16.2162 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.2901 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.3272 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 61.2245 | 55.5556 | 68.1818 | 95.6693 | 15 | 12 | 15 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.4567 | 61.1138 | 68.1865 | 74.1910 | 1284 | 817 | 1316 | 614 | 580 | 94.4625 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | homalt | 76.2677 | 86.4754 | 68.2154 | 83.1764 | 633 | 99 | 646 | 301 | 277 | 92.0266 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | het | 63.3134 | 59.0633 | 68.2225 | 93.3005 | 1753 | 1215 | 1754 | 817 | 20 | 2.4480 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 79.1206 | 94.1309 | 68.2390 | 28.6996 | 417 | 26 | 434 | 202 | 202 | 100.0000 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | het | 77.5988 | 89.9303 | 68.2413 | 78.1425 | 17165 | 1922 | 17046 | 7933 | 1721 | 21.6942 | |