PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36951-37000 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.1928 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 99.4356 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 99.4398 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | het | 79.3587 | 98.0198 | 66.6667 | 92.5863 | 198 | 4 | 262 | 131 | 20 | 15.2672 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | homalt | 40.5797 | 29.1667 | 66.6667 | 85.0000 | 7 | 17 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 98.6364 | 3 | 3 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 66.6667 | 66.6667 | 98.5646 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 70.5882 | 75.0000 | 66.6667 | 98.5849 | 3 | 1 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.5075 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 34.4828 | 23.2558 | 66.6667 | 81.2500 | 10 | 33 | 6 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | het | 44.4444 | 33.3333 | 66.6667 | 96.7213 | 13 | 26 | 8 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | het | 45.7143 | 34.7826 | 66.6667 | 96.1340 | 16 | 30 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | func_cds | * | 29.0909 | 18.6047 | 66.6667 | 47.8261 | 8 | 35 | 8 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.3896 | 5.6338 | 66.6667 | 80.6452 | 4 | 67 | 4 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 85.7143 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | * | 59.2593 | 53.3333 | 66.6667 | 87.5000 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 76.1905 | 88.8889 | 66.6667 | 85.8824 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 59.2593 | 53.3333 | 66.6667 | 88.9908 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 76.1905 | 88.8889 | 66.6667 | 87.5000 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | * | 59.2593 | 53.3333 | 66.6667 | 89.0909 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 76.1905 | 88.8889 | 66.6667 | 87.6289 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.3333 | 25.9259 | 66.6667 | 97.2727 | 7 | 20 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.3103 | 11.2903 | 66.6667 | 90.9366 | 21 | 165 | 20 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5714 | 70.5882 | 66.6667 | 94.3750 | 12 | 5 | 12 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 59.2593 | 53.3333 | 66.6667 | 95.5720 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | * | 64.0000 | 61.5385 | 66.6667 | 55.5556 | 8 | 5 | 8 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.8276 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.6842 | 82.3529 | 66.6667 | 96.9741 | 14 | 3 | 14 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | * | 27.1540 | 17.0492 | 66.6667 | 90.7063 | 52 | 253 | 50 | 25 | 2 | 8.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 66.6667 | 66.6667 | 66.6667 | 88.4615 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.5608 | 1.8293 | 66.6667 | 94.3750 | 9 | 483 | 6 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9583 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9167 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9305 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9021 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 99.0244 | 2 | 4 | 4 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | * | 77.1930 | 91.6667 | 66.6667 | 67.3913 | 11 | 1 | 10 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 63.7584 | 2 | 1 | 36 | 18 | 12 | 66.6667 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.2836 | 3 | 0 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 66.6667 | 66.6667 | 66.6667 | 89.5899 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |