PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36201-36250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 63.3474 | 64.9842 | 61.7910 | 92.1527 | 206 | 111 | 207 | 128 | 110 | 85.9375 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | het | 73.3265 | 90.1398 | 61.7994 | 65.3970 | 2450 | 268 | 2459 | 1520 | 1502 | 98.8158 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | * | 63.8171 | 65.9528 | 61.8155 | 58.2289 | 8068 | 4165 | 12360 | 7635 | 5847 | 76.5815 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 26.6490 | 16.9856 | 61.8182 | 56.0000 | 71 | 347 | 68 | 42 | 32 | 76.1905 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | het | 33.8586 | 23.3121 | 61.8312 | 60.5350 | 549 | 1806 | 520 | 321 | 10 | 3.1153 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | het | 72.1503 | 86.5704 | 61.8482 | 92.2282 | 2817 | 437 | 2811 | 1734 | 389 | 22.4337 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2663 | 99.4083 | 61.8644 | 83.3568 | 168 | 1 | 73 | 45 | 44 | 97.7778 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 63.4344 | 65.0794 | 61.8705 | 90.0572 | 82 | 44 | 86 | 53 | 13 | 24.5283 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 42.4936 | 32.3575 | 61.8768 | 70.3993 | 210 | 439 | 211 | 130 | 89 | 68.4615 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | het | 74.2218 | 92.7195 | 61.8773 | 94.8028 | 866 | 68 | 857 | 528 | 16 | 3.0303 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | het | 64.7498 | 67.8947 | 61.8834 | 96.6176 | 129 | 61 | 138 | 85 | 29 | 34.1176 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 76.3850 | 99.7475 | 61.8895 | 40.6948 | 4741 | 12 | 4828 | 2973 | 2967 | 99.7982 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 61.9048 | 95.5696 | 0 | 0 | 13 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 61.9048 | 99.3151 | 0 | 0 | 13 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | het | 49.6025 | 41.3793 | 61.9048 | 83.7209 | 12 | 17 | 13 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 69.7987 | 80.0000 | 61.9048 | 99.5263 | 16 | 4 | 13 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 68.3076 | 76.1255 | 61.9459 | 62.5658 | 558 | 175 | 573 | 352 | 267 | 75.8523 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | het | 72.2384 | 86.6323 | 61.9461 | 92.2704 | 2858 | 441 | 2852 | 1752 | 393 | 22.4315 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.6652 | 61.3861 | 61.9469 | 89.2176 | 62 | 39 | 70 | 43 | 11 | 25.5814 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 63.7487 | 65.6442 | 61.9597 | 88.3791 | 214 | 112 | 215 | 132 | 108 | 81.8182 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 60.9836 | 60.0000 | 62.0000 | 58.6311 | 603 | 402 | 682 | 418 | 306 | 73.2057 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 73.1196 | 89.0957 | 62.0019 | 58.7223 | 670 | 82 | 669 | 410 | 358 | 87.3171 | |
| gduggal-snapvard | INDEL | C1_5 | HG002complexvar | het | 76.5611 | 100.0000 | 62.0235 | 78.1252 | 7 | 0 | 2213 | 1355 | 344 | 25.3875 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.1549 | 89.1170 | 62.0422 | 57.0748 | 434 | 53 | 559 | 342 | 258 | 75.4386 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 62.0482 | 94.8028 | 0 | 0 | 103 | 63 | 11 | 17.4603 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 74.3472 | 92.7273 | 62.0482 | 92.1103 | 102 | 8 | 103 | 63 | 45 | 71.4286 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 55.1228 | 49.5784 | 62.0635 | 51.0444 | 8761 | 8910 | 8975 | 5486 | 4728 | 86.1830 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 55.1228 | 49.5784 | 62.0635 | 51.0444 | 8761 | 8910 | 8975 | 5486 | 4728 | 86.1830 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 59.0651 | 56.3393 | 62.0679 | 49.1269 | 10287 | 7972 | 10307 | 6299 | 4780 | 75.8851 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | * | 60.6316 | 59.2593 | 62.0690 | 91.8310 | 16 | 11 | 18 | 11 | 3 | 27.2727 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 34.7356 | 24.1158 | 62.0690 | 73.8149 | 75 | 236 | 72 | 44 | 25 | 56.8182 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.6774 | 79.4118 | 62.0690 | 95.4946 | 54 | 14 | 54 | 33 | 3 | 9.0909 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 73.4694 | 90.0000 | 62.0690 | 95.9441 | 18 | 2 | 18 | 11 | 2 | 18.1818 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 61.6156 | 61.1636 | 62.0744 | 51.1512 | 22381 | 14211 | 22533 | 13767 | 10331 | 75.0418 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.3026 | 95.6815 | 62.0803 | 56.2366 | 709 | 32 | 758 | 463 | 445 | 96.1123 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | het | 76.6355 | 100.0000 | 62.1212 | 94.9309 | 37 | 0 | 41 | 25 | 5 | 20.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.4098 | 95.8333 | 62.1622 | 79.5580 | 23 | 1 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.2151 | 70.8333 | 62.1622 | 50.0000 | 17 | 7 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 34.7933 | 24.1573 | 62.1622 | 74.0351 | 43 | 135 | 46 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | * | 65.7143 | 69.6970 | 62.1622 | 90.1857 | 23 | 10 | 23 | 14 | 7 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.8242 | 97.1831 | 62.1622 | 52.7660 | 69 | 2 | 69 | 42 | 42 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.9608 | 97.6331 | 62.1622 | 84.2553 | 165 | 4 | 69 | 42 | 41 | 97.6190 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.3489 | 66.6667 | 62.1868 | 95.0669 | 2 | 1 | 273 | 166 | 40 | 24.0964 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 56.4553 | 51.6684 | 62.2197 | 60.5704 | 16228 | 15180 | 16207 | 9841 | 9672 | 98.2827 | |