PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36151-36200 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | het | 70.6222 | 82.9664 | 61.4755 | 58.2800 | 1432 | 294 | 12099 | 7582 | 5798 | 76.4706 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | het | 57.5214 | 54.0284 | 61.4973 | 97.7292 | 114 | 97 | 115 | 72 | 33 | 45.8333 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | het | 71.8617 | 86.4074 | 61.5077 | 92.1188 | 4488 | 706 | 4455 | 2788 | 641 | 22.9914 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | * | 60.9208 | 60.3448 | 61.5079 | 79.7590 | 70 | 46 | 155 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 67.5308 | 74.8546 | 61.5124 | 50.8317 | 4376 | 1470 | 8728 | 5461 | 4703 | 86.1198 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 67.5308 | 74.8546 | 61.5124 | 50.8317 | 4376 | 1470 | 8728 | 5461 | 4703 | 86.1198 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 47.1342 | 38.1966 | 61.5321 | 37.8247 | 2639 | 4270 | 5213 | 3259 | 2660 | 81.6201 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.2317 | 53.4884 | 61.5385 | 74.3421 | 23 | 20 | 24 | 15 | 8 | 53.3333 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 57.1429 | 53.3333 | 61.5385 | 94.3723 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | het | 76.1905 | 100.0000 | 61.5385 | 94.4444 | 16 | 0 | 16 | 10 | 4 | 40.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.3774 | 59.2593 | 61.5385 | 97.8369 | 16 | 11 | 16 | 10 | 1 | 10.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 61.5385 | 94.3355 | 0 | 0 | 16 | 10 | 3 | 30.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | het | 76.1905 | 100.0000 | 61.5385 | 77.1930 | 8 | 0 | 8 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | het | 76.1905 | 100.0000 | 61.5385 | 51.8519 | 8 | 0 | 8 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | hetalt | 21.2999 | 12.8788 | 61.5385 | 98.2562 | 17 | 115 | 16 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 44.1674 | 34.4444 | 61.5385 | 89.4737 | 31 | 59 | 32 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 62.9373 | 64.4013 | 61.5385 | 92.2212 | 199 | 110 | 200 | 125 | 107 | 85.6000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 32.7016 | 22.2672 | 61.5385 | 82.5000 | 55 | 192 | 56 | 35 | 29 | 82.8571 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 61.5385 | 96.2099 | 0 | 0 | 16 | 10 | 5 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1905 | 100.0000 | 61.5385 | 74.6753 | 24 | 0 | 24 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 49.4821 | 41.3725 | 61.5460 | 81.3094 | 633 | 897 | 629 | 393 | 384 | 97.7099 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 49.4821 | 41.3725 | 61.5460 | 81.3094 | 633 | 897 | 629 | 393 | 384 | 97.7099 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 57.3590 | 53.6994 | 61.5538 | 40.3800 | 929 | 801 | 927 | 579 | 570 | 98.4456 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.2793 | 53.5509 | 61.5656 | 80.5733 | 7367 | 6390 | 10114 | 6314 | 1790 | 28.3497 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.2793 | 53.5509 | 61.5656 | 80.5733 | 7367 | 6390 | 10114 | 6314 | 1790 | 28.3497 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.4098 | 97.1831 | 61.6071 | 52.3404 | 69 | 2 | 69 | 43 | 43 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.4098 | 97.1831 | 61.6071 | 52.7426 | 69 | 2 | 69 | 43 | 43 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.4098 | 97.1831 | 61.6071 | 52.7426 | 69 | 2 | 69 | 43 | 43 | 100.0000 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | het | 71.9604 | 86.4932 | 61.6087 | 92.1600 | 4553 | 711 | 4519 | 2816 | 645 | 22.9048 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.2653 | 12.1269 | 61.6162 | 73.8786 | 65 | 471 | 61 | 38 | 4 | 10.5263 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_siren | * | 61.0410 | 60.4651 | 61.6279 | 85.1724 | 52 | 34 | 53 | 33 | 20 | 60.6061 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.8228 | 58.1169 | 61.6319 | 75.6941 | 1253 | 903 | 1624 | 1011 | 502 | 49.6538 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.1592 | 62.6870 | 61.6403 | 53.4558 | 19107 | 11373 | 30086 | 18723 | 13632 | 72.8088 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 62.1592 | 62.6870 | 61.6403 | 53.4558 | 19107 | 11373 | 30086 | 18723 | 13632 | 72.8088 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.2377 | 71.5690 | 61.6456 | 93.1383 | 1893 | 752 | 1903 | 1184 | 39 | 3.2939 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | homalt | 50.9001 | 43.3404 | 61.6541 | 74.8392 | 410 | 536 | 410 | 255 | 239 | 93.7255 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2887 | 100.0000 | 61.6667 | 83.5391 | 169 | 0 | 74 | 46 | 45 | 97.8261 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 61.1743 | 60.6771 | 61.6798 | 85.0530 | 233 | 151 | 235 | 146 | 135 | 92.4658 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | het | 71.6829 | 85.5422 | 61.6883 | 91.3966 | 71 | 12 | 95 | 59 | 50 | 84.7458 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | het | 70.3504 | 81.8182 | 61.7021 | 97.9322 | 27 | 6 | 29 | 18 | 8 | 44.4444 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.2002 | 89.9486 | 61.7099 | 71.3186 | 1226 | 137 | 1357 | 842 | 135 | 16.0333 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 74.2485 | 93.1298 | 61.7328 | 60.2144 | 1586 | 117 | 3299 | 2045 | 1364 | 66.6993 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 67.7419 | 75.0000 | 61.7647 | 95.8231 | 21 | 7 | 21 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |