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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 712 713 714 715 716 717 718 719 720 ... 1720 1721 » 35751-35800 / 86044 show all
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	49.9555	43.2887	59.0497	58.0143	2164	2835	2150	1491	1450	97.2502
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	49.9555	43.2887	59.0497	58.0143	2164	2835	2150	1491	1450	97.2502
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	40.0753	30.3227	59.0755	67.9189	1917	4405	1917	1328	1307	98.4187
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	40.0753	30.3227	59.0755	67.9189	1917	4405	1917	1328	1307	98.4187
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	68.1961	80.6452	59.0765	60.9919	950	228	934	647	601	92.8903
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	72.8692	95.0543	59.0803	78.2168	27292	1420	27789	19247	483	2.5095
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	72.8692	95.0543	59.0803	78.2168	27292	1420	27789	19247	483	2.5095
gduggal-snapvard	INDEL	D1_5	map_l250_m0_e0	*	74.2857	100.0000	59.0909	96.7105	46	0	65	45	8	17.7778
gduggal-snapvard	INDEL	I16_PLUS	HG002complexvar	homalt	0.6437	0.3236	59.0909	48.8372	1	308	13	9	6	66.6667
ciseli-custom	INDEL	I6_15	map_siren	*	31.6781	21.6393	59.0909	84.5070	66	239	65	45	41	91.1111
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	34.8549	24.7113	59.1245	71.3782	963	2934	959	663	642	96.8326
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	57.4519	55.8442	59.1549	62.6561	215	170	336	232	51	21.9828
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	55.2529	51.8248	59.1667	72.9556	497	462	497	343	309	90.0875
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	58.8795	58.5755	59.1866	73.4509	4918	3478	6913	4767	1577	33.0816
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	74.1073	99.0588	59.1965	64.7074	3894	37	3949	2722	32	1.1756
gduggal-bwavard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	46.7905	38.6828	59.1981	64.3248	511	810	502	346	329	95.0867
eyeh-varpipe	INDEL	D6_15	segdup	homalt	71.4286	90.0000	59.2105	90.9524	45	5	45	31	30	96.7742
ciseli-custom	INDEL	I16_PLUS	*	het	16.1440	9.3451	59.2506	84.8956	254	2464	253	174	123	70.6897
ciseli-custom	SNP	tv	tech_badpromoters	het	73.5632	96.9697	59.2593	50.0000	32	1	32	22	0	0.0000
qzeng-custom	INDEL	I16_PLUS	map_l100_m0_e0	*	65.3061	72.7273	59.2593	88.7967	8	3	16	11	0	0.0000
qzeng-custom	INDEL	I6_15	map_l125_m2_e1	het	61.2286	63.3333	59.2593	88.9646	19	11	48	33	3	9.0909
gduggal-snapvard	INDEL	I6_15	map_l150_m0_e0	het	74.4186	100.0000	59.2593	91.4013	4	0	16	11	8	72.7273
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	71.1558	89.0067	59.2690	47.6573	7473	923	18665	12827	11064	86.2556
ciseli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	51.3330	45.2682	59.2743	64.1063	1612	1949	1601	1100	1012	92.0000
gduggal-bwavard	INDEL	I16_PLUS	HG002complexvar	het	70.9283	88.2707	59.2814	63.1347	587	78	594	408	285	69.8529
ciseli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	67.2347	77.6447	59.2860	62.9451	4345	1251	4683	3216	1125	34.9813
gduggal-snapplat	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	31.6644	21.5926	59.3458	76.4835	141	512	127	87	36	41.3793
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	71.3875	89.5226	59.3622	63.3723	1444	169	1452	994	947	95.2716
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	49.8333	42.9384	59.3660	55.4700	830	1103	824	564	402	71.2766
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_triTR_11to50	het	0.0000	0.0000	59.3750	80.0000	0	0	19	13	2	15.3846
gduggal-snapvard	INDEL	D1_5	tech_badpromoters	het	70.7447	87.5000	59.3750	58.9744	7	1	19	13	10	76.9231
ciseli-custom	INDEL	*	map_l250_m0_e0	*	55.0520	51.2821	59.4203	98.6428	40	38	41	28	8	28.5714
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	47.6809	39.8148	59.4203	84.0278	43	65	41	28	28	100.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	50.9329	44.5458	59.4580	50.1890	1074	1337	1097	748	692	92.5134
gduggal-snapvard	INDEL	I1_5	map_l250_m0_e0	het	70.5302	86.6667	59.4595	98.2596	13	2	22	15	3	20.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	59.4595	59.4595	59.4595	84.3882	22	15	22	15	6	40.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	73.3937	95.8580	59.4595	79.8913	162	7	66	45	45	100.0000
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	74.0005	97.9533	59.4604	43.3923	10194	213	10226	6972	6772	97.1314
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	73.1099	94.8597	59.4736	81.1920	13822	749	13965	9516	255	2.6797
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	73.1099	94.8597	59.4736	81.1920	13822	749	13965	9516	255	2.6797
gduggal-snapplat	INDEL	I6_15	*	het	35.6936	25.4959	59.4871	60.4118	2558	7475	2505	1706	46	2.6964
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	36.7207	26.5537	59.5041	62.8834	47	130	72	49	25	51.0204
ciseli-custom	INDEL	I6_15	HG002complexvar	homalt	51.5500	45.4695	59.5078	51.7279	552	662	532	362	333	91.9890
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	68.9127	81.8182	59.5238	95.2246	54	12	50	34	3	8.8235
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	41.4656	31.8078	59.5455	61.4035	139	298	131	89	78	87.6404
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	53.3229	48.2739	59.5513	59.8591	7761	8316	10724	7284	5656	77.6496
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	53.3229	48.2739	59.5513	59.8591	7761	8316	10724	7284	5656	77.6496
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	69.0093	82.0142	59.5643	43.2407	10269	2252	28735	19507	17809	91.2954

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