PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35451-35500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2413 | 99.3100 | 56.7681 | 68.0924 | 2159 | 15 | 2164 | 1648 | 10 | 0.6068 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 41.0672 | 32.1689 | 56.7708 | 80.9901 | 221 | 466 | 218 | 166 | 160 | 96.3855 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.8849 | 51.2397 | 56.8182 | 60.5970 | 124 | 118 | 150 | 114 | 77 | 67.5439 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 66.1090 | 79.0323 | 56.8182 | 83.1418 | 49 | 13 | 50 | 38 | 38 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 57.2013 | 57.5771 | 56.8303 | 44.8249 | 3978 | 2931 | 6053 | 4598 | 4136 | 89.9522 | |
| anovak-vg | INDEL | I1_5 | map_l100_m1_e0 | * | 58.0113 | 59.2233 | 56.8479 | 83.7016 | 793 | 546 | 826 | 627 | 447 | 71.2919 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.1132 | 30.9859 | 56.8627 | 26.6187 | 44 | 98 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.0929 | 41.6667 | 56.8627 | 26.6187 | 10 | 14 | 58 | 44 | 40 | 90.9091 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 42.0382 | 33.3333 | 56.8966 | 98.7039 | 1 | 2 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | het | 50.5360 | 45.4545 | 56.8966 | 97.6697 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e1 | het | 50.5360 | 45.4545 | 56.8966 | 97.7255 | 30 | 36 | 33 | 25 | 3 | 12.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.5882 | 92.9577 | 56.8966 | 51.0549 | 66 | 5 | 66 | 50 | 50 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.3587 | 15.4953 | 56.9132 | 61.6995 | 183 | 998 | 177 | 134 | 97 | 72.3881 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 34.4736 | 24.7232 | 56.9231 | 34.0999 | 737 | 2244 | 1517 | 1148 | 971 | 84.5819 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.7555 | 54.6245 | 56.9343 | 95.0071 | 691 | 574 | 702 | 531 | 51 | 9.6045 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | homalt | 69.3408 | 88.6364 | 56.9444 | 94.4573 | 39 | 5 | 41 | 31 | 28 | 90.3226 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 44.0143 | 35.8696 | 56.9444 | 58.6207 | 33 | 59 | 41 | 31 | 27 | 87.0968 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 70.2794 | 91.7657 | 56.9459 | 43.6183 | 1081 | 97 | 3718 | 2811 | 2776 | 98.7549 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | * | 58.1032 | 59.3002 | 56.9536 | 86.9940 | 322 | 221 | 344 | 260 | 177 | 68.0769 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | * | 48.6337 | 42.4224 | 56.9758 | 58.5526 | 697 | 946 | 682 | 515 | 432 | 83.8835 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | * | 58.1587 | 59.3567 | 57.0081 | 84.8215 | 812 | 556 | 846 | 638 | 455 | 71.3166 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.0093 | 94.1144 | 0 | 0 | 61 | 46 | 4 | 8.6957 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | * | 59.2100 | 61.5385 | 57.0513 | 92.6450 | 88 | 55 | 89 | 67 | 35 | 52.2388 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 65.7662 | 77.6219 | 57.0522 | 44.3331 | 11346 | 3271 | 31729 | 23885 | 20828 | 87.2012 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | * | 48.0486 | 41.4858 | 57.0779 | 45.2877 | 1988 | 2804 | 2008 | 1510 | 1270 | 84.1060 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 54.3651 | 51.8939 | 57.0833 | 88.8786 | 137 | 127 | 137 | 103 | 60 | 58.2524 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 58.4075 | 59.7906 | 57.0870 | 76.5044 | 571 | 384 | 584 | 439 | 331 | 75.3986 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | het | 71.2910 | 94.8148 | 57.1195 | 50.0000 | 384 | 21 | 349 | 262 | 262 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.7015 | 62.5000 | 57.1429 | 82.5000 | 5 | 3 | 4 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 61.5385 | 66.6667 | 57.1429 | 92.6316 | 4 | 2 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 72.7273 | 100.0000 | 57.1429 | 99.4996 | 4 | 0 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 92.0455 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 57.1429 | 99.3671 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 57.1429 | 96.6507 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.9388 | 63.0225 | 57.1429 | 46.3295 | 196 | 115 | 376 | 282 | 235 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m1_e0 | * | 48.9796 | 42.8571 | 57.1429 | 96.3918 | 3 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.6825 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 96.8037 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.4951 | 11 | 9 | 8 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | I16_PLUS | segdup | homalt | 60.0000 | 63.1579 | 57.1429 | 87.7907 | 12 | 7 | 12 | 9 | 5 | 55.5556 | |