PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.0900 | 47.6832 | 55.0210 | 72.0588 | 1698 | 1863 | 1704 | 1393 | 1371 | 98.4207 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.8039 | 91.6288 | 55.0827 | 70.2532 | 1412 | 129 | 1398 | 1140 | 1083 | 95.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.7192 | 50.5474 | 55.0862 | 52.4074 | 1062 | 1039 | 991 | 808 | 803 | 99.3812 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.1020 | 96.1986 | 0 | 0 | 27 | 22 | 12 | 54.5455 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | het | 51.9039 | 49.0566 | 55.1020 | 98.7937 | 26 | 27 | 27 | 22 | 5 | 22.7273 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | homalt | 34.0455 | 24.6293 | 55.1181 | 60.1881 | 299 | 915 | 280 | 228 | 101 | 44.2982 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 26.6407 | 17.5625 | 55.1471 | 66.3088 | 232 | 1089 | 225 | 183 | 170 | 92.8962 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 25.0503 | 16.2037 | 55.1724 | 73.1481 | 35 | 181 | 32 | 26 | 8 | 30.7692 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | homalt | 62.0296 | 70.8333 | 55.1724 | 55.3846 | 17 | 7 | 16 | 13 | 10 | 76.9231 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.6060 | 94.2197 | 55.1887 | 74.6108 | 326 | 20 | 351 | 285 | 24 | 8.4211 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 67.0699 | 85.4447 | 55.1993 | 68.7686 | 634 | 108 | 637 | 517 | 507 | 98.0658 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 69.6749 | 94.4284 | 55.2038 | 82.9047 | 3915 | 231 | 3941 | 3198 | 130 | 4.0650 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 62.9804 | 73.2283 | 55.2486 | 68.8468 | 93 | 34 | 100 | 81 | 11 | 13.5802 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | homalt | 70.9467 | 99.0881 | 55.2542 | 86.1176 | 326 | 3 | 326 | 264 | 264 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 69.8918 | 95.0578 | 55.2616 | 86.6554 | 904 | 47 | 919 | 744 | 173 | 23.2527 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 54.5455 | 53.8462 | 55.2632 | 91.9718 | 63 | 54 | 63 | 51 | 28 | 54.9020 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 48.9054 | 43.8596 | 55.2632 | 99.4833 | 25 | 32 | 21 | 17 | 14 | 82.3529 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.9042 | 65.3860 | 55.2704 | 39.0162 | 1787 | 946 | 3015 | 2440 | 1867 | 76.5164 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.2455 | 82.5976 | 55.2980 | 57.8918 | 973 | 205 | 1670 | 1350 | 1223 | 90.5926 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 37.1500 | 27.9605 | 55.3371 | 59.9550 | 595 | 1533 | 591 | 477 | 362 | 75.8910 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 55.3398 | 93.8763 | 0 | 0 | 57 | 46 | 4 | 8.6957 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 39.0803 | 30.2044 | 55.3435 | 41.1500 | 399 | 922 | 725 | 585 | 494 | 84.4444 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.0348 | 99.0643 | 55.3687 | 72.8200 | 847 | 8 | 856 | 690 | 5 | 0.7246 | |
| ciseli-custom | SNP | tv | HG002compoundhet | * | 66.9226 | 84.5568 | 55.3744 | 51.6390 | 7545 | 1378 | 7573 | 6103 | 515 | 8.4385 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 36.4602 | 27.1762 | 55.3790 | 36.8827 | 256 | 686 | 1359 | 1095 | 912 | 83.2877 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 56.8863 | 58.4740 | 55.3825 | 72.7189 | 797 | 566 | 818 | 659 | 497 | 75.4173 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.0456 | 65.5567 | 55.3892 | 58.1977 | 630 | 331 | 740 | 596 | 423 | 70.9732 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.5814 | 69.3069 | 55.4054 | 91.6337 | 70 | 31 | 82 | 66 | 26 | 39.3939 | |
| gduggal-snapvard | INDEL | * | tech_badpromoters | het | 61.5513 | 69.2308 | 55.4054 | 61.8557 | 27 | 12 | 41 | 33 | 24 | 72.7273 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | het | 63.1714 | 73.4694 | 55.4054 | 79.7814 | 36 | 13 | 41 | 33 | 4 | 12.1212 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 53.8310 | 52.3323 | 55.4180 | 55.7723 | 19835 | 18067 | 20150 | 16210 | 13033 | 80.4010 | |
| anovak-vg | INDEL | I6_15 | * | het | 35.7228 | 26.3530 | 55.4313 | 44.2246 | 2644 | 7389 | 4312 | 3467 | 1789 | 51.6008 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 50.5167 | 46.3701 | 55.4778 | 71.4813 | 5806 | 6715 | 7292 | 5852 | 1482 | 25.3247 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 44.8798 | 37.6755 | 55.4905 | 73.6943 | 4185 | 6923 | 5685 | 4560 | 444 | 9.7368 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 57.9234 | 60.5313 | 55.5310 | 45.5422 | 319 | 208 | 502 | 402 | 297 | 73.8806 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | * | 58.7189 | 62.2642 | 55.5556 | 96.4296 | 66 | 40 | 70 | 56 | 31 | 55.3571 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | het | 63.8298 | 75.0000 | 55.5556 | 92.7419 | 3 | 1 | 5 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | het | 54.4218 | 53.3333 | 55.5556 | 90.8163 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | het | 54.4218 | 53.3333 | 55.5556 | 91.7431 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | het | 52.6316 | 50.0000 | 55.5556 | 91.9283 | 8 | 8 | 10 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 71.4286 | 100.0000 | 55.5556 | 98.6861 | 7 | 0 | 5 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 71.4286 | 100.0000 | 55.5556 | 99.3767 | 5 | 0 | 5 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.8406 | 90.4762 | 55.5556 | 99.9404 | 19 | 2 | 20 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 52.6316 | 50.0000 | 55.5556 | 97.1787 | 2 | 2 | 20 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 95.4003 | 0 | 0 | 15 | 12 | 9 | 75.0000 | |