PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35101-35150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.9183 | 93.2692 | 53.4031 | 79.4954 | 194 | 14 | 204 | 178 | 167 | 93.8202 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 67.6237 | 92.1660 | 53.4032 | 48.7367 | 3353 | 285 | 3413 | 2978 | 2941 | 98.7576 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 48.9231 | 45.1335 | 53.4074 | 60.1656 | 997 | 1212 | 1105 | 964 | 732 | 75.9336 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 39.0246 | 30.7443 | 53.4091 | 73.8095 | 95 | 214 | 94 | 82 | 74 | 90.2439 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | het | 66.1017 | 86.6667 | 53.4247 | 82.5150 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | het | 66.1017 | 86.6667 | 53.4247 | 82.9240 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.4755 | 62.1622 | 53.4460 | 78.1472 | 414 | 252 | 411 | 358 | 355 | 99.1620 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.4755 | 62.1622 | 53.4460 | 78.1472 | 414 | 252 | 411 | 358 | 355 | 99.1620 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 53.4653 | 87.9042 | 0 | 0 | 54 | 47 | 11 | 23.4043 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 46.3519 | 40.9091 | 53.4653 | 59.0264 | 99 | 143 | 108 | 94 | 71 | 75.5319 | |
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.2142 | 94.1896 | 53.4687 | 80.5464 | 308 | 19 | 316 | 275 | 253 | 92.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | * | 57.3803 | 61.8557 | 53.5088 | 92.9889 | 60 | 37 | 61 | 53 | 18 | 33.9623 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | homalt | 68.2473 | 94.1176 | 53.5326 | 86.8477 | 192 | 12 | 197 | 171 | 154 | 90.0585 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.2610 | 83.5526 | 53.5398 | 93.1390 | 127 | 25 | 121 | 105 | 14 | 13.3333 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | het | 65.9341 | 85.7143 | 53.5714 | 70.5263 | 6 | 1 | 15 | 13 | 3 | 23.0769 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 50.5051 | 47.7707 | 53.5714 | 69.8925 | 75 | 82 | 75 | 65 | 61 | 93.8462 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | homalt | 69.4826 | 98.7842 | 53.5874 | 88.0589 | 325 | 4 | 239 | 207 | 207 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 68.0380 | 93.0844 | 53.6124 | 81.3886 | 6407 | 476 | 6493 | 5618 | 90 | 1.6020 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.9412 | 85.6091 | 53.6220 | 35.4284 | 4069 | 684 | 4049 | 3502 | 3279 | 93.6322 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 47.0909 | 41.9643 | 53.6443 | 57.0892 | 517 | 715 | 552 | 477 | 405 | 84.9057 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.0137 | 96.7213 | 53.6458 | 60.5749 | 59 | 2 | 103 | 89 | 2 | 2.2472 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 67.7028 | 91.6754 | 53.6688 | 45.2639 | 10528 | 956 | 14570 | 12578 | 12360 | 98.2668 | |
| anovak-vg | INDEL | I1_5 | map_siren | homalt | 68.1692 | 93.3993 | 53.6710 | 71.9974 | 1132 | 80 | 1155 | 997 | 947 | 94.9850 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | het | 47.9644 | 43.3333 | 53.7037 | 97.5785 | 26 | 34 | 29 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I1_5 | segdup | homalt | 68.8866 | 95.9831 | 53.7209 | 91.7355 | 454 | 19 | 462 | 398 | 376 | 94.4724 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | * | 62.2963 | 74.0741 | 53.7500 | 88.5057 | 20 | 7 | 43 | 37 | 29 | 78.3784 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | het | 69.0686 | 96.5761 | 53.7572 | 56.2100 | 4513 | 160 | 4600 | 3957 | 124 | 3.1337 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 46.1659 | 40.4511 | 53.7611 | 64.5212 | 269 | 396 | 243 | 209 | 202 | 96.6507 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.3574 | 93.6937 | 53.8071 | 85.3341 | 416 | 28 | 424 | 364 | 95 | 26.0989 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.1516 | 85.8124 | 53.8205 | 46.0515 | 4875 | 806 | 4846 | 4158 | 3808 | 91.5825 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.6190 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.8505 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | homalt | 63.9719 | 78.7879 | 53.8462 | 80.2281 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 53.8462 | 64.8649 | 0 | 0 | 7 | 6 | 6 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | * | 33.6000 | 24.4186 | 53.8462 | 69.2913 | 21 | 65 | 21 | 18 | 16 | 88.8889 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | homalt | 53.8462 | 53.8462 | 53.8462 | 92.8571 | 7 | 6 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.0000 | 100.0000 | 53.8462 | 99.7623 | 6 | 0 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | het | 38.5321 | 30.0000 | 53.8462 | 85.7143 | 6 | 14 | 7 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.0251 | 48.4848 | 53.8462 | 69.0476 | 16 | 17 | 7 | 6 | 6 | 100.0000 | |