PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35051-35100 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 54.4118 | 56.0606 | 52.8571 | 97.3987 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 43.5803 | 37.0727 | 52.8590 | 78.7470 | 423 | 718 | 416 | 371 | 276 | 74.3935 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.1072 | 91.8336 | 52.8714 | 33.4573 | 596 | 53 | 3121 | 2782 | 2751 | 98.8857 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.8636 | 83.8324 | 52.8950 | 61.2756 | 15229 | 2937 | 15174 | 13513 | 12202 | 90.2982 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.8636 | 83.8324 | 52.8950 | 61.2756 | 15229 | 2937 | 15174 | 13513 | 12202 | 90.2982 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | het | 65.6975 | 86.6667 | 52.8986 | 82.1244 | 26 | 4 | 73 | 65 | 50 | 76.9231 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.8403 | 94.5137 | 52.9086 | 74.2327 | 379 | 22 | 382 | 340 | 307 | 90.2941 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.6981 | 52.4613 | 52.9371 | 95.3580 | 746 | 676 | 757 | 673 | 56 | 8.3210 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 67.1186 | 91.6667 | 52.9412 | 99.4967 | 11 | 1 | 9 | 8 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 62.0690 | 75.0000 | 52.9412 | 92.5764 | 9 | 3 | 9 | 8 | 7 | 87.5000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.7276 | 58.8235 | 52.9412 | 95.5959 | 10 | 7 | 9 | 8 | 5 | 62.5000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 8.5511 | 4.6512 | 52.9412 | 66.0000 | 8 | 164 | 9 | 8 | 3 | 37.5000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 65.5717 | 86.0759 | 52.9568 | 90.4618 | 1224 | 198 | 1200 | 1066 | 55 | 5.1595 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | homalt | 68.8793 | 98.4802 | 52.9605 | 78.9109 | 324 | 5 | 322 | 286 | 246 | 86.0140 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | homalt | 67.4017 | 92.6554 | 52.9657 | 79.0814 | 492 | 39 | 509 | 452 | 424 | 93.8053 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 45.1042 | 39.2655 | 52.9825 | 57.7778 | 139 | 215 | 151 | 134 | 99 | 73.8806 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 29.6006 | 20.5326 | 53.0130 | 62.9452 | 717 | 2775 | 695 | 616 | 592 | 96.1039 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 69.2124 | 99.6564 | 53.0165 | 77.8632 | 290 | 1 | 290 | 257 | 257 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 35.3557 | 26.5193 | 53.0233 | 64.2263 | 96 | 266 | 114 | 101 | 94 | 93.0693 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 50.3306 | 47.8296 | 53.1077 | 74.2686 | 2391 | 2608 | 2401 | 2120 | 1904 | 89.8113 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 50.3306 | 47.8296 | 53.1077 | 74.2686 | 2391 | 2608 | 2401 | 2120 | 1904 | 89.8113 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 53.1250 | 95.4416 | 0 | 0 | 17 | 15 | 13 | 86.6667 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 43.0380 | 36.1702 | 53.1250 | 73.1092 | 68 | 120 | 68 | 60 | 53 | 88.3333 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 25.0146 | 16.3556 | 53.1570 | 69.3516 | 1034 | 5288 | 985 | 868 | 794 | 91.4747 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 25.0146 | 16.3556 | 53.1570 | 69.3516 | 1034 | 5288 | 985 | 868 | 794 | 91.4747 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | * | 61.1650 | 72.0000 | 53.1646 | 88.2789 | 18 | 7 | 42 | 37 | 29 | 78.3784 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.4455 | 88.5350 | 53.1777 | 65.7562 | 834 | 108 | 820 | 722 | 692 | 95.8449 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7241 | 97.0414 | 53.2000 | 69.5122 | 164 | 5 | 133 | 117 | 117 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | homalt | 63.4446 | 78.5714 | 53.2020 | 84.3340 | 539 | 147 | 540 | 475 | 429 | 90.3158 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 19.2271 | 11.7330 | 53.2189 | 75.6912 | 283 | 2129 | 248 | 218 | 182 | 83.4862 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | het | 69.4737 | 100.0000 | 53.2258 | 97.1702 | 33 | 0 | 33 | 29 | 2 | 6.8966 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3077 | 35.1064 | 53.2258 | 74.8988 | 66 | 122 | 66 | 58 | 49 | 84.4828 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.0086 | 90.2935 | 53.2710 | 31.8471 | 400 | 43 | 399 | 350 | 337 | 96.2857 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 47.5340 | 42.9094 | 53.2758 | 84.2729 | 6684 | 8893 | 6855 | 6012 | 485 | 8.0672 | |
| ciseli-custom | INDEL | D16_PLUS | * | homalt | 66.9047 | 89.8936 | 53.2793 | 59.6184 | 1521 | 171 | 1511 | 1325 | 1241 | 93.6604 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.4444 | 95.6522 | 53.2872 | 40.7787 | 154 | 7 | 154 | 135 | 135 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 51.4833 | 49.7958 | 53.2893 | 59.9443 | 21579 | 21756 | 21523 | 18866 | 18163 | 96.2737 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9508 | 90.0254 | 53.2915 | 48.7249 | 14188 | 1572 | 14272 | 12509 | 12414 | 99.2405 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | homalt | 67.9194 | 93.5860 | 53.3011 | 82.5513 | 321 | 22 | 331 | 290 | 267 | 92.0690 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.8590 | 93.2584 | 53.3333 | 46.3895 | 249 | 18 | 392 | 343 | 331 | 96.5015 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.3151 | 45.8599 | 53.3333 | 66.3342 | 72 | 85 | 72 | 63 | 61 | 96.8254 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | het | 69.5652 | 100.0000 | 53.3333 | 51.6129 | 8 | 0 | 8 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.0851 | 94.1176 | 53.3333 | 91.3295 | 16 | 1 | 16 | 14 | 7 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0472 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 53.3333 | 97.0238 | 0 | 0 | 8 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 59.2593 | 66.6667 | 53.3333 | 64.0000 | 24 | 12 | 24 | 21 | 20 | 95.2381 | |