PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34401-34450 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 97.5309 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 97.7778 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.2825 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 95.7447 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.4912 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 50.0000 | 94.2857 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 50.0000 | 98.7097 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 50.0000 | 98.4848 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 50.0000 | 96.0610 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 96.1443 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.7826 | 0 | 0 | 6 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.6811 | 0 | 0 | 23 | 23 | 11 | 47.8261 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.7213 | 0 | 0 | 28 | 28 | 11 | 39.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 95.1515 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 50.0000 | 98.9150 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 50.0000 | 98.7928 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 94.5946 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.3871 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 50.0000 | 96.0784 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.0000 | 63.6364 | 50.0000 | 66.6667 | 7 | 4 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 10.3093 | 5.7471 | 50.0000 | 77.7778 | 5 | 82 | 5 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | hetalt | 46.6667 | 43.7500 | 50.0000 | 77.7778 | 7 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.1429 | 66.6667 | 50.0000 | 95.6522 | 18 | 9 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.8457 | 34.5247 | 50.0000 | 39.0585 | 454 | 861 | 479 | 479 | 439 | 91.6493 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 59 | 2 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 63.6364 | 87.5000 | 50.0000 | 29.4118 | 7 | 1 | 18 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.1264 | 8 | 0 | 5 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |