PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34251-34300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5327 | 93.3333 | 49.3151 | 88.3013 | 14 | 1 | 36 | 37 | 29 | 78.3784 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.4235 | 77.7551 | 49.4100 | 70.5217 | 381 | 109 | 335 | 343 | 340 | 99.1254 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.1498 | 70.5882 | 49.4382 | 90.1657 | 72 | 30 | 88 | 90 | 30 | 33.3333 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 50.5691 | 51.7504 | 49.4405 | 81.2333 | 340 | 317 | 486 | 497 | 6 | 1.2072 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 63.8782 | 90.0427 | 49.4957 | 35.6465 | 633 | 70 | 638 | 651 | 650 | 99.8464 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | homalt | 62.2576 | 83.8550 | 49.5068 | 39.2928 | 1018 | 196 | 1054 | 1075 | 989 | 92.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.0813 | 57.1912 | 49.5224 | 53.3105 | 676 | 506 | 674 | 687 | 585 | 85.1528 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 53.2753 | 57.5758 | 49.5726 | 84.7656 | 19 | 14 | 58 | 59 | 1 | 1.6949 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 62.0275 | 82.7982 | 49.5879 | 79.0744 | 361 | 75 | 361 | 367 | 274 | 74.6594 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | het | 52.4874 | 55.7243 | 49.6058 | 30.8102 | 477 | 379 | 2580 | 2621 | 1862 | 71.0416 | |
| anovak-vg | INDEL | I6_15 | * | homalt | 61.4755 | 80.7661 | 49.6232 | 33.6435 | 5039 | 1200 | 5202 | 5281 | 4685 | 88.7143 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 57.1877 | 67.4267 | 49.6483 | 70.3545 | 1242 | 600 | 1200 | 1217 | 171 | 14.0509 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 46.9190 | 44.4652 | 49.6593 | 57.4245 | 19269 | 24066 | 19242 | 19506 | 19313 | 99.0106 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 45.0513 | 41.2144 | 49.6758 | 77.2450 | 7344 | 10475 | 9194 | 9314 | 1766 | 18.9607 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 41.7793 | 36.0397 | 49.6933 | 42.7847 | 1416 | 2513 | 1458 | 1476 | 1368 | 92.6829 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.4409 | 83.9161 | 49.7175 | 92.3969 | 120 | 23 | 88 | 89 | 17 | 19.1011 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 64.9932 | 93.6517 | 49.7646 | 52.1813 | 7863 | 533 | 7822 | 7896 | 7660 | 97.0111 | |
| ckim-isaac | INDEL | I1_5 | HG002compoundhet | het | 60.5332 | 77.1765 | 49.7948 | 74.1605 | 656 | 194 | 728 | 734 | 607 | 82.6975 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8454 | 39.1619 | 49.8013 | 62.4191 | 757 | 1176 | 752 | 758 | 719 | 94.8549 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.8825 | 97.2660 | 49.8107 | 91.6259 | 925 | 26 | 921 | 928 | 61 | 6.5733 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3979 | 87.0324 | 49.8584 | 69.2241 | 349 | 52 | 352 | 354 | 346 | 97.7401 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 66.3492 | 99.1247 | 49.8623 | 65.6965 | 906 | 8 | 905 | 910 | 5 | 0.5495 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 25.7297 | 17.3354 | 49.8866 | 62.4361 | 229 | 1092 | 220 | 221 | 16 | 7.2398 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.2539 | 22.7545 | 49.8886 | 70.3042 | 228 | 774 | 224 | 225 | 200 | 88.8889 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.1909 | 86.1224 | 49.9033 | 76.4142 | 422 | 68 | 258 | 259 | 240 | 92.6641 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 46.2416 | 43.0804 | 49.9034 | 66.9082 | 772 | 1020 | 775 | 778 | 771 | 99.1003 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.4802 | 22.9894 | 49.9162 | 51.5028 | 303 | 1015 | 298 | 299 | 239 | 79.9331 | |
| anovak-vg | INDEL | I6_15 | HG002compoundhet | * | 31.2822 | 22.7666 | 49.9744 | 31.5356 | 1998 | 6778 | 1954 | 1956 | 1488 | 76.0736 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5313 | 12.1359 | 50.0000 | 45.6954 | 25 | 181 | 41 | 41 | 38 | 92.6829 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 60.8696 | 77.7778 | 50.0000 | 52.2124 | 28 | 8 | 27 | 27 | 21 | 77.7778 | |
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.2143 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | * | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 50.0000 | 50.0000 | 50.0000 | 94.1176 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9986 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 94.5205 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.6486 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.2759 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.8974 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.4962 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.4375 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.5401 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.5714 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.3471 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 84.6154 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 80.0000 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |