PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34201-34250 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 55.8033 | 65.7682 | 48.4608 | 63.2482 | 488 | 254 | 488 | 519 | 513 | 98.8439 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 53.1925 | 58.9431 | 48.4642 | 77.5994 | 145 | 101 | 142 | 151 | 149 | 98.6755 | |
| ciseli-custom | INDEL | I6_15 | segdup | homalt | 42.7935 | 38.2979 | 48.4848 | 89.2157 | 18 | 29 | 16 | 17 | 16 | 94.1176 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 48.4848 | 84.1346 | 0 | 1 | 144 | 153 | 45 | 29.4118 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | het | 63.8563 | 93.3333 | 48.5294 | 87.8571 | 14 | 1 | 33 | 35 | 27 | 77.1429 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.9197 | 98.0276 | 48.5294 | 92.7910 | 497 | 10 | 495 | 525 | 34 | 6.4762 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 17.6716 | 10.8017 | 48.5470 | 60.1499 | 322 | 2659 | 284 | 301 | 281 | 93.3555 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 46.5132 | 44.6362 | 48.5550 | 51.5466 | 16918 | 20984 | 16885 | 17890 | 17519 | 97.9262 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 31.5326 | 23.3410 | 48.5830 | 48.6486 | 102 | 335 | 120 | 127 | 95 | 74.8031 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 49.8073 | 51.0638 | 48.6111 | 53.5484 | 24 | 23 | 35 | 37 | 30 | 81.0811 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 64.0961 | 94.0104 | 48.6239 | 70.6199 | 361 | 23 | 371 | 392 | 15 | 3.8265 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.0386 | 32.6054 | 48.6345 | 60.4703 | 1299 | 2685 | 1300 | 1373 | 1338 | 97.4508 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 58.6404 | 73.8255 | 48.6364 | 71.6495 | 110 | 39 | 107 | 113 | 113 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 61.8951 | 85.0543 | 48.6486 | 86.3559 | 939 | 165 | 900 | 950 | 47 | 4.9474 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3491 | 46.0834 | 48.6863 | 59.5527 | 14743 | 17249 | 14732 | 15527 | 15257 | 98.2611 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 64.4256 | 95.0820 | 48.7179 | 70.6767 | 58 | 3 | 57 | 60 | 52 | 86.6667 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.8267 | 24.7508 | 48.7252 | 53.0585 | 149 | 453 | 172 | 181 | 136 | 75.1381 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.2975 | 18.9591 | 48.7288 | 61.9968 | 51 | 218 | 230 | 242 | 193 | 79.7521 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.5786 | 95.6522 | 48.7437 | 63.6197 | 22 | 1 | 97 | 102 | 88 | 86.2745 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.2811 | 94.3173 | 48.7547 | 73.3962 | 1278 | 77 | 1292 | 1358 | 1314 | 96.7599 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 48.7654 | 95.6463 | 0 | 0 | 79 | 83 | 9 | 10.8434 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | * | 44.4193 | 40.7689 | 48.7878 | 63.5182 | 5037 | 7318 | 5393 | 5661 | 4783 | 84.4904 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | * | 60.0000 | 77.7778 | 48.8372 | 93.2602 | 21 | 6 | 21 | 22 | 3 | 13.6364 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.5233 | 24.3750 | 48.8550 | 47.4950 | 39 | 121 | 128 | 134 | 134 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 24.2451 | 16.1226 | 48.8616 | 65.3414 | 563 | 2929 | 558 | 584 | 571 | 97.7740 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6535 | 62.0000 | 48.8636 | 68.3453 | 31 | 19 | 43 | 45 | 30 | 66.6667 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.4050 | 90.1585 | 48.8958 | 86.0954 | 1365 | 149 | 1417 | 1481 | 7 | 0.4727 | |
| gduggal-snapplat | INDEL | D1_5 | HG002compoundhet | * | 46.3272 | 44.0131 | 48.8981 | 72.6225 | 5385 | 6850 | 5880 | 6145 | 3920 | 63.7917 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | homalt | 49.8532 | 50.8274 | 48.9155 | 43.2091 | 860 | 832 | 857 | 895 | 865 | 96.6480 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.3870 | 78.8652 | 48.9241 | 68.3622 | 1112 | 298 | 1205 | 1258 | 386 | 30.6836 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | het | 62.3220 | 85.8085 | 48.9296 | 57.3342 | 3513 | 581 | 5051 | 5272 | 5065 | 96.0736 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.7012 | 83.4697 | 48.9383 | 56.4509 | 510 | 101 | 484 | 505 | 504 | 99.8020 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 50.2457 | 51.5789 | 48.9796 | 83.9344 | 49 | 46 | 48 | 50 | 49 | 98.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 41.1142 | 35.4136 | 49.0020 | 38.2625 | 976 | 1780 | 982 | 1022 | 950 | 92.9550 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.3933 | 98.2278 | 49.0105 | 39.1883 | 2328 | 42 | 2328 | 2422 | 2406 | 99.3394 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.7638 | 36.3625 | 49.0496 | 86.4561 | 5846 | 10231 | 5987 | 6219 | 484 | 7.7826 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.7638 | 36.3625 | 49.0496 | 86.4561 | 5846 | 10231 | 5987 | 6219 | 484 | 7.7826 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 49.0566 | 95.2861 | 0 | 0 | 78 | 81 | 9 | 11.1111 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | homalt | 59.7701 | 76.4706 | 49.0566 | 94.4906 | 26 | 8 | 26 | 27 | 6 | 22.2222 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 57.1040 | 68.1818 | 49.1228 | 92.0943 | 45 | 21 | 56 | 58 | 21 | 36.2069 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.5844 | 94.0959 | 49.1648 | 73.3293 | 1275 | 80 | 1295 | 1339 | 1224 | 91.4115 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 63.7991 | 90.6900 | 49.2081 | 87.2696 | 828 | 85 | 870 | 898 | 2 | 0.2227 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 59.7518 | 76.0417 | 49.2099 | 69.9253 | 219 | 69 | 218 | 225 | 200 | 88.8889 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4166 | 93.0962 | 49.2457 | 68.6592 | 445 | 33 | 457 | 471 | 445 | 94.4798 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.2473 | 96.5460 | 49.2736 | 54.6440 | 8106 | 290 | 8140 | 8380 | 8238 | 98.3055 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8569 | 39.4929 | 49.3052 | 41.4961 | 7211 | 11048 | 7203 | 7406 | 7360 | 99.3789 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 44.7752 | 41.0011 | 49.3146 | 53.2015 | 5652 | 8133 | 5684 | 5842 | 5100 | 87.2989 | |