PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34101-34150 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.4192 | 29.7932 | 46.8354 | 63.9946 | 634 | 1494 | 629 | 714 | 663 | 92.8571 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 27.6970 | 19.6607 | 46.8447 | 68.8822 | 197 | 805 | 193 | 219 | 209 | 95.4338 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.1783 | 40.0414 | 46.8485 | 64.6530 | 774 | 1159 | 773 | 877 | 864 | 98.5177 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 43.5514 | 40.6847 | 46.8526 | 86.1967 | 511 | 745 | 588 | 667 | 17 | 2.5487 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 46.8531 | 84.4057 | 0 | 0 | 134 | 152 | 44 | 28.9474 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | homalt | 55.0459 | 66.6667 | 46.8750 | 67.3469 | 14 | 7 | 15 | 17 | 16 | 94.1176 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 37.9747 | 31.9149 | 46.8750 | 76.2963 | 15 | 32 | 15 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 59.9965 | 83.1683 | 46.9231 | 93.4110 | 84 | 17 | 61 | 69 | 13 | 18.8406 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.3787 | 92.9984 | 46.9277 | 41.3270 | 6867 | 517 | 6843 | 7739 | 7577 | 97.9067 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 39.3162 | 33.8235 | 46.9388 | 96.7399 | 23 | 45 | 23 | 26 | 20 | 76.9231 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.1255 | 25.5937 | 46.9388 | 67.3333 | 97 | 282 | 115 | 130 | 84 | 64.6154 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.4770 | 93.3666 | 46.9454 | 60.6415 | 16637 | 1182 | 16660 | 18828 | 18130 | 96.2928 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 58.8404 | 78.7365 | 46.9711 | 49.1951 | 511 | 138 | 504 | 569 | 529 | 92.9701 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 41.0817 | 36.4955 | 46.9862 | 60.8362 | 654 | 1138 | 647 | 730 | 671 | 91.9178 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 62.3646 | 92.6829 | 46.9925 | 68.5950 | 38 | 3 | 125 | 141 | 118 | 83.6879 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 46.1795 | 45.3564 | 47.0329 | 65.4087 | 1807 | 2177 | 1815 | 2044 | 1056 | 51.6634 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8376 | 94.6349 | 47.0342 | 60.4447 | 16863 | 956 | 16945 | 19082 | 18800 | 98.5222 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 27.4286 | 19.3548 | 47.0588 | 86.4000 | 12 | 50 | 8 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 47.0588 | 92.4612 | 0 | 0 | 16 | 18 | 2 | 11.1111 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 47.0588 | 94.0351 | 0 | 0 | 8 | 9 | 8 | 88.8889 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 44.0541 | 41.4041 | 47.0666 | 44.8610 | 3916 | 5542 | 3939 | 4430 | 3649 | 82.3702 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 53.3873 | 61.5385 | 47.1429 | 81.9588 | 16 | 10 | 33 | 37 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 60.0572 | 82.6840 | 47.1535 | 44.1989 | 382 | 80 | 381 | 427 | 422 | 98.8290 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 63.5773 | 97.5422 | 47.1569 | 24.3464 | 1905 | 48 | 1924 | 2156 | 2141 | 99.3043 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5479 | 97.2152 | 47.2013 | 46.3823 | 6493 | 186 | 6527 | 7301 | 7199 | 98.6029 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 47.2362 | 89.5263 | 0 | 0 | 94 | 105 | 43 | 40.9524 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 51.0719 | 55.5556 | 47.2579 | 93.7840 | 400 | 320 | 405 | 452 | 26 | 5.7522 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.8435 | 85.3147 | 47.2815 | 88.9072 | 2318 | 399 | 2261 | 2521 | 114 | 4.5220 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 40.5494 | 35.4887 | 47.2934 | 60.0683 | 236 | 429 | 332 | 370 | 282 | 76.2162 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 13.0521 | 7.5688 | 47.3684 | 59.8945 | 33 | 403 | 72 | 80 | 25 | 31.2500 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 2.1951 | 1.1236 | 47.3684 | 61.6162 | 1 | 88 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 3.6290 | 1.8868 | 47.3684 | 61.2245 | 1 | 52 | 18 | 20 | 12 | 60.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.6324 | 61.8056 | 47.3684 | 65.3285 | 178 | 110 | 180 | 200 | 197 | 98.5000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 57.5581 | 73.3333 | 47.3684 | 85.4962 | 11 | 4 | 9 | 10 | 1 | 10.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.0251 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.3947 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 62.0163 | 89.6774 | 47.3968 | 67.2160 | 139 | 16 | 264 | 293 | 16 | 5.4608 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 44.4518 | 41.8244 | 47.4313 | 70.0067 | 1701 | 2366 | 1708 | 1893 | 1866 | 98.5737 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.1152 | 33.2790 | 47.4335 | 60.0049 | 613 | 1229 | 767 | 850 | 647 | 76.1176 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 44.1195 | 41.2053 | 47.4772 | 55.2735 | 1094 | 1561 | 1355 | 1499 | 1289 | 85.9907 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 47.5000 | 88.2353 | 0 | 0 | 38 | 42 | 8 | 19.0476 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 47.5000 | 93.9940 | 0 | 0 | 19 | 21 | 3 | 14.2857 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.9265 | 84.9007 | 47.5105 | 54.7800 | 9750 | 1734 | 9733 | 10753 | 9871 | 91.7976 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.4926 | 91.1184 | 47.5533 | 63.3312 | 831 | 81 | 826 | 911 | 847 | 92.9748 | |
| anovak-vg | INDEL | I6_15 | segdup | homalt | 59.8909 | 80.8511 | 47.5610 | 87.6506 | 38 | 9 | 39 | 43 | 42 | 97.6744 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 62.4499 | 90.8511 | 47.5768 | 61.6650 | 1281 | 129 | 1286 | 1417 | 1364 | 96.2597 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |