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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 677 678 679 680 681 682 683 684 685 ... 1720 1721 » 34001-34050 / 86044 show all
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	56.6038	75.0000	45.4545	78.4314	6	2	5	6	6	100.0000
mlin-fermikit	INDEL	D16_PLUS	map_l125_m0_e0	het	50.0000	55.5556	45.4545	92.5676	5	4	5	6	0	0.0000
qzeng-custom	INDEL	D16_PLUS	decoy	*	62.5000	100.0000	45.4545	99.0196	6	0	5	6	0	0.0000
qzeng-custom	INDEL	D16_PLUS	map_l250_m2_e0	*	62.5000	100.0000	45.4545	99.0081	5	0	5	6	0	0.0000
qzeng-custom	INDEL	D16_PLUS	map_l250_m2_e1	*	62.5000	100.0000	45.4545	99.0152	5	0	5	6	0	0.0000
qzeng-custom	INDEL	C6_15	HG002compoundhet	het	0.0000	0.0000	45.4545	92.3611	0	0	5	6	0	0.0000
eyeh-varpipe	INDEL	D6_15	HG002compoundhet	*	39.7758	35.3560	45.4585	32.6471	3193	5838	3138	3765	3754	99.7078
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	55.0228	69.6517	45.4722	29.4037	420	183	1868	2240	2137	95.4018
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	41.1509	37.5633	45.4962	49.7904	2374	3946	3379	4048	3339	82.4852
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	41.1509	37.5633	45.4962	49.7904	2374	3946	3379	4048	3339	82.4852
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	55.8140	72.1805	45.4976	78.8365	96	37	96	115	111	96.5217
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	60.1889	88.8889	45.4986	84.0583	640	80	657	787	7	0.8895
gduggal-snapvard	INDEL	I16_PLUS	HG002complexvar	het	3.1923	1.6541	45.5157	59.5648	11	654	203	243	141	58.0247
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	55.8285	72.0960	45.5506	48.7100	1111	430	3450	4124	3618	87.7304
anovak-vg	INDEL	C1_5	HG002complexvar	het	55.6456	71.4286	45.5752	82.8658	5	2	103	123	15	12.1951
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	45.1124	44.6159	45.6200	29.5676	1330	1651	1880	2241	2138	95.4038
gduggal-bwavard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	0.0000	0.0000	45.6233	95.4980	0	1	172	205	16	7.8049
gduggal-bwavard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	0.0000	0.0000	45.6233	95.4980	0	1	172	205	16	7.8049
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	48.9137	52.6535	45.6699	40.6819	506	455	1176	1399	1152	82.3445
anovak-vg	INDEL	I16_PLUS	*	homalt	55.6761	71.2364	45.6948	36.9604	1112	449	1141	1356	1055	77.8024
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	16.8236	10.3093	45.7020	62.4933	360	3132	319	379	351	92.6121
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	39.0244	34.0426	45.7143	78.5276	16	31	16	19	18	94.7368
ciseli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	17.8423	11.0825	45.7447	82.7206	43	345	43	51	42	82.3529
jpowers-varprowl	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	10.1232	5.6911	45.7627	90.8385	28	464	27	32	27	84.3750
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	34.3818	27.5134	45.8204	41.0718	1081	2848	1184	1400	1153	82.3571
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	51.8064	59.5808	45.8266	64.9803	597	405	571	675	121	17.9259
qzeng-custom	INDEL	I16_PLUS	map_l100_m2_e0	*	52.5373	61.5385	45.8333	82.9384	16	10	33	39	0	0.0000
qzeng-custom	INDEL	I16_PLUS	map_l100_m2_e1	*	52.5373	61.5385	45.8333	83.1382	16	10	33	39	0	0.0000
qzeng-custom	INDEL	I6_15	map_l100_m2_e1	*	56.6467	74.1379	45.8333	77.4799	86	30	154	182	4	2.1978
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	29.3005	21.5292	45.8515	79.6625	107	390	105	124	119	95.9677
anovak-vg	INDEL	I16_PLUS	HG002compoundhet	het	0.0000	0.0000	45.8564	44.3077	0	47	83	98	29	29.5918
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	26.5368	18.6688	45.8678	43.7209	115	501	111	131	110	83.9695
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	38.9071	33.7695	45.8884	60.0034	1084	2126	1077	1270	1203	94.7244
gduggal-snapvard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	45.6100	45.3313	45.8922	57.7778	1806	2178	2860	3372	2355	69.8399
eyeh-varpipe	INDEL	*	HG002compoundhet	*	44.6205	43.3845	45.9289	60.1662	12998	16962	12816	15088	14950	99.0854
ciseli-custom	INDEL	D6_15	map_l100_m0_e0	homalt	55.7377	70.8333	45.9459	88.1029	17	7	17	20	19	95.0000
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	59.8797	85.7519	46.0008	48.3317	7174	1192	7166	8412	7803	92.7603
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	32.6056	25.2495	46.0100	54.7659	253	749	369	433	324	74.8268
egarrison-hhga	INDEL	*	HG002compoundhet	het	60.4981	88.2511	46.0244	58.9093	3613	481	4706	5519	5300	96.0319
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	46.0317	89.0815	0	0	87	102	40	39.2157
qzeng-custom	INDEL	I6_15	map_l100_m1_e0	*	56.7042	73.6842	46.0843	75.6598	84	30	153	179	4	2.2346
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	60.2273	86.8852	46.0870	64.8318	53	8	53	62	60	96.7742
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	48.5964	51.3854	46.0946	95.3289	408	386	419	490	30	6.1225
qzeng-custom	INDEL	I6_15	map_l100_m2_e0	*	56.8558	74.1379	46.1078	77.3098	86	30	154	180	4	2.2222
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	24.4898	16.6667	46.1538	69.0476	6	30	6	7	2	28.5714
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	34.4471	27.4775	46.1538	56.0976	61	161	108	126	89	70.6349
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	36.1644	29.7297	46.1538	94.8310	11	26	12	14	4	28.5714
gduggal-snapvard	INDEL	I16_PLUS	HG002complexvar	*	1.7978	0.9167	46.1538	59.1623	12	1297	216	252	147	58.3333
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	39.0586	33.8542	46.1538	69.3790	130	254	132	154	146	94.8052
eyeh-varpipe	INDEL	D16_PLUS	segdup	homalt	43.7956	41.6667	46.1538	91.0345	5	7	6	7	7	100.0000

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