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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 676 677 678 679 680 681 682 683 684 ... 1720 1721 » 33951-34000 / 86044 show all
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	40.1009	36.3420	44.7271	57.2051	6422	11249	6417	7930	7870	99.2434
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	40.1009	36.3420	44.7271	57.2051	6422	11249	6417	7930	7870	99.2434
ciseli-custom	SNP	tv	HG002compoundhet	het	56.8474	77.9585	44.7336	53.7648	3643	1030	3678	4544	89	1.9586
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	28.8305	21.2560	44.7917	78.0069	88	326	86	106	102	96.2264
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	49.3741	54.9918	44.7978	36.5595	336	275	831	1024	846	82.6172
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	60.3322	92.2485	44.8239	74.0840	1678	141	1693	2084	2043	98.0326
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	60.3322	92.2485	44.8239	74.0840	1678	141	1693	2084	2043	98.0326
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	57.4586	80.0000	44.8276	74.3363	12	3	13	16	16	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	61.3598	97.0699	44.8576	61.9828	5433	164	5465	6718	6663	99.1813
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	41.5658	38.7187	44.8649	39.9351	139	220	166	204	160	78.4314
gduggal-snapvard	INDEL	C1_5	*	*	59.8991	90.0000	44.8865	88.9071	9	1	3125	3837	400	10.4248
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	34.1360	27.5399	44.8870	36.7812	759	1997	834	1024	846	82.6172
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	53.8464	67.1975	44.9213	37.7402	633	309	2198	2695	2403	89.1651
egarrison-hhga	INDEL	D6_15	HG002compoundhet	het	59.7254	89.0187	44.9378	47.8055	762	94	1336	1637	1603	97.9230
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	53.1638	65.0431	44.9536	49.5979	1282	689	3296	4036	3328	82.4579
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	53.1638	65.0431	44.9536	49.5979	1282	689	3296	4036	3328	82.4579
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	51.2934	59.7015	44.9612	67.1338	120	81	116	142	139	97.8873
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	59.1795	86.4865	44.9782	68.8011	128	20	103	126	124	98.4127
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	60.7229	93.3333	45.0000	76.4706	14	1	18	22	21	95.4545
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	61.6432	97.7532	45.0148	36.4990	2741	63	2745	3353	3280	97.8228
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	43.5285	42.1324	45.0202	75.7921	4244	5829	4231	5167	5021	97.1744
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	59.4656	87.5000	45.0363	57.4665	175	25	186	227	205	90.3084
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	43.7892	42.5926	45.0549	82.5000	46	62	41	50	25	50.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.7796	27.0106	45.0758	47.5149	356	962	357	435	415	95.4023
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	60.9906	94.2736	45.0765	50.8414	11804	717	11838	14424	14189	98.3708
gduggal-bwavard	INDEL	C1_5	map_l125_m1_e0	het	0.0000	0.0000	45.0980	95.9363	0	0	23	28	4	14.2857
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	58.1410	81.6327	45.1485	57.8816	400	90	228	277	270	97.4729
gduggal-snapvard	INDEL	C1_5	map_siren	*	0.0000	0.0000	45.1852	95.1587	0	0	122	148	16	10.8108
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	43.0132	41.0316	45.1960	37.9193	1599	2298	2225	2698	2406	89.1772
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	60.1899	90.0452	45.2026	89.8966	199	22	212	257	21	8.1712
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	29.8168	22.2403	45.2229	54.6898	137	479	142	172	160	93.0233
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	60.4770	91.1661	45.2459	46.8023	258	25	414	501	450	89.8204
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.1197	61.4379	45.2558	24.9536	94	59	1097	1327	1322	99.6232
gduggal-bwavard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	61.9084	97.6773	45.3144	61.3396	5467	130	5469	6600	6491	98.3485
ckim-dragen	INDEL	I1_5	HG002compoundhet	homalt	62.2015	99.0881	45.3278	87.8082	326	3	325	392	391	99.7449
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	30.5882	23.0769	45.3488	45.7413	39	130	78	94	74	78.7234
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	62.0729	98.0650	45.4073	82.4158	10592	209	10757	12933	236	1.8248
gduggal-snapvard	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	0.0000	0.0000	45.4545	92.3611	0	0	5	6	0	0.0000
gduggal-snapvard	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	0.0000	0.0000	45.4545	89.5238	0	0	80	96	28	29.1667
gduggal-bwavard	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	0.0000	0.0000	45.4545	97.8218	0	0	5	6	0	0.0000
gduggal-bwavard	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	0.0000	0.0000	45.4545	97.6744	0	0	5	6	0	0.0000
gduggal-bwaplat	INDEL	D16_PLUS	HG002compoundhet	homalt	52.6316	62.5000	45.4545	79.2453	5	3	5	6	6	100.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	54.7264	68.7500	45.4545	94.3445	11	5	10	12	1	8.3333
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	62.5000	100.0000	45.4545	82.5397	6	0	5	6	1	16.6667
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	het	47.6190	50.0000	45.4545	98.2026	5	5	5	6	1	16.6667
ciseli-custom	INDEL	D6_15	map_l250_m2_e0	het	40.0000	35.7143	45.4545	98.1788	5	9	5	6	1	16.6667
cchapple-custom	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	0.0000	0.0000	45.4545	90.4348	0	0	5	6	1	16.6667
cchapple-custom	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	0.0000	0.0000	45.4545	89.5238	0	0	5	6	1	16.6667
cchapple-custom	INDEL	C1_5	map_l100_m0_e0	het	0.0000	0.0000	45.4545	94.8598	0	0	10	12	5	41.6667
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	47.6190	50.0000	45.4545	94.3878	2	2	5	6	6	100.0000

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