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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 670 671 672 673 674 675 676 677 678 ... 1720 1721 » 33651-33700 / 86044 show all
anovak-vg	INDEL	I6_15	map_l250_m2_e1	het	40.0000	40.0000	40.0000	96.5517	2	3	2	3	1	33.3333
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	54.8494	87.1622	40.0150	81.6424	2064	304	2128	3190	200	6.2696
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.2123	28.3742	40.0394	54.5997	1726	4357	3049	4566	3071	67.2580
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	45.3517	52.2843	40.0424	58.1189	103	94	189	283	245	86.5724
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	50.1574	67.0715	40.0560	49.5050	497	244	1573	2354	1678	71.2829
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	55.0165	87.3144	40.1609	56.7914	647	94	649	967	945	97.7249
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	56.3122	94.1558	40.1678	59.0614	435	27	431	642	610	95.0156
qzeng-custom	INDEL	I6_15	map_l100_m2_e0	het	52.8122	77.0492	40.1747	78.2319	47	14	92	137	4	2.9197
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	38.8587	37.6192	40.1826	50.2147	907	1504	1584	2358	1680	71.2468
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	45.2330	51.6779	40.2174	66.9659	77	72	74	110	110	100.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	31.7698	26.2547	40.2181	60.9567	633	1778	627	932	870	93.3476
cchapple-custom	INDEL	*	HG002compoundhet	homalt	57.1228	98.5423	40.2182	82.1359	676	10	516	767	761	99.2177
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	56.0346	92.0301	40.2800	69.6241	1224	106	1237	1834	1809	98.6369
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	49.2114	63.1579	40.3101	83.2031	60	35	52	77	41	53.2468
qzeng-custom	INDEL	I6_15	map_l100_m1_e0	het	52.7792	76.2712	40.3509	76.8057	45	14	92	136	4	2.9412
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	48.5484	60.8696	40.3756	32.1656	14	9	86	127	125	98.4252
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	54.6746	84.6154	40.3846	55.1724	11	2	42	62	42	67.7419
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	55.3475	87.7323	40.4253	50.7774	3304	462	3289	4847	4536	93.5837
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	55.3475	87.7323	40.4253	50.7774	3304	462	3289	4847	4536	93.5837
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	42.7693	45.3355	40.4781	43.2897	277	334	508	747	649	86.8809
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	52.5915	75.0000	40.4930	99.8509	93	31	115	169	4	2.3669
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	48.6766	60.9756	40.5063	39.2308	25	16	96	141	140	99.2908
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	36.9719	33.9924	40.5239	46.0310	3215	6243	3218	4723	4680	99.0896
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	36.2353	32.7562	40.5412	52.4633	4843	9942	4839	7097	7056	99.4223
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	39.9506	39.3669	40.5518	64.0084	485	747	485	711	356	50.0703
gduggal-snapvard	INDEL	C1_5	map_l100_m2_e1	het	0.0000	0.0000	40.5594	95.7390	0	0	58	85	9	10.5882
eyeh-varpipe	INDEL	D16_PLUS	HG002complexvar	homalt	44.7304	49.8270	40.5797	45.3249	144	145	140	205	205	100.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	18.5714	12.0370	40.6250	54.2857	13	95	13	19	3	15.7895
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	22.8070	15.8537	40.6250	85.9649	13	69	13	19	12	63.1579
ciseli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	53.7560	79.3033	40.6582	61.4881	387	101	383	559	525	93.9177
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	56.4307	91.8797	40.7201	70.5769	1222	108	1244	1811	1677	92.6008
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	35.4839	31.4286	40.7407	83.1250	11	24	11	16	15	93.7500
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	11.7647	6.8750	40.7407	67.2727	11	149	22	32	14	43.7500
gduggal-snapfb	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	57.6740	98.5178	40.7711	77.3433	1994	30	2041	2965	42	1.4165
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.8948	28.9913	40.7948	49.7853	799	1957	811	1177	1070	90.9091
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	38.0404	35.5733	40.8751	72.9582	757	1371	766	1108	1004	90.6137
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	53.2492	76.3251	40.8875	57.2493	216	67	258	373	323	86.5952
gduggal-bwavard	INDEL	D16_PLUS	map_l100_m0_e0	*	50.0000	64.2857	40.9091	94.2181	18	10	18	26	5	19.2308
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	55.9506	88.4848	40.9091	87.7738	146	19	153	221	13	5.8824
raldana-dualsentieon	INDEL	*	HG002compoundhet	homalt	57.9932	99.4169	40.9364	81.2893	682	4	682	984	980	99.5935
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	40.2067	39.4727	40.9685	65.1113	1048	1607	1066	1536	1023	66.6016
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	37.5614	34.6667	40.9836	65.1429	26	49	25	36	31	86.1111
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	37.1023	33.8847	40.9951	49.8226	4671	9114	4639	6677	6648	99.5657
gduggal-snapvard	INDEL	C1_5	map_l100_m2_e0	het	0.0000	0.0000	41.0072	95.7686	0	0	57	82	9	10.9756
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	35.3662	31.0680	41.0448	83.2080	64	142	55	79	42	53.1646
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	55.2770	84.4907	41.0749	86.9620	1095	201	1070	1535	61	3.9739
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.7984	28.7018	41.0959	58.9386	692	1719	690	989	957	96.7644
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	37.9377	35.2193	41.1108	54.0150	3903	7179	3901	5588	5544	99.2126
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	53.0778	74.8120	41.1290	71.0280	199	67	204	292	37	12.6712
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	56.2607	88.9328	41.1449	83.1108	1125	140	1150	1645	97	5.8967

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