PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33551-33600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.2627 | 83.1081 | 39.1892 | 51.8438 | 123 | 25 | 87 | 135 | 134 | 99.2593 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.0890 | 20.6844 | 39.2387 | 39.7707 | 272 | 1043 | 268 | 415 | 363 | 87.4699 | |
| eyeh-varpipe | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 39.2857 | 93.7639 | 0 | 0 | 11 | 17 | 14 | 82.3529 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 39.2857 | 92.8021 | 0 | 0 | 11 | 17 | 6 | 35.2941 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 24.7191 | 18.0328 | 39.2857 | 73.0769 | 22 | 100 | 22 | 34 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 23.0412 | 16.2978 | 39.3035 | 77.1850 | 81 | 416 | 79 | 122 | 119 | 97.5410 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.3279 | 87.8989 | 39.3131 | 46.3121 | 2782 | 383 | 2770 | 4276 | 4018 | 93.9663 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 44.1721 | 50.3828 | 39.3245 | 62.5903 | 329 | 324 | 326 | 503 | 469 | 93.2406 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 53.0788 | 81.5710 | 39.3382 | 71.0021 | 540 | 122 | 642 | 990 | 87 | 8.7879 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 39.3443 | 96.5321 | 0 | 0 | 24 | 37 | 22 | 59.4595 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | het | 17.6734 | 11.3960 | 39.3474 | 71.0797 | 360 | 2799 | 410 | 632 | 372 | 58.8608 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | homalt | 56.3380 | 99.1254 | 39.3519 | 82.7957 | 680 | 6 | 680 | 1048 | 928 | 88.5496 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 54.2716 | 87.3611 | 39.3624 | 86.5975 | 629 | 91 | 605 | 932 | 37 | 3.9700 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 16.9764 | 10.8209 | 39.3750 | 52.0958 | 58 | 478 | 63 | 97 | 77 | 79.3814 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1772 | 16.4208 | 39.3809 | 42.5111 | 345 | 1756 | 458 | 705 | 585 | 82.9787 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.5217 | 100.0000 | 39.3939 | 54.1667 | 13 | 0 | 13 | 20 | 19 | 95.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 39.4270 | 89.8476 | 0 | 0 | 289 | 444 | 84 | 18.9189 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 43.7922 | 49.2121 | 39.4477 | 61.5764 | 406 | 419 | 400 | 614 | 591 | 96.2541 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 43.7922 | 49.2121 | 39.4477 | 61.5764 | 406 | 419 | 400 | 614 | 591 | 96.2541 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.3836 | 87.5000 | 39.4521 | 89.5744 | 133 | 19 | 144 | 221 | 4 | 1.8100 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.4797 | 14.7388 | 39.5833 | 70.4160 | 79 | 457 | 76 | 116 | 116 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 22.9777 | 16.1847 | 39.5973 | 75.5015 | 319 | 1652 | 295 | 450 | 6 | 1.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 22.9777 | 16.1847 | 39.5973 | 75.5015 | 319 | 1652 | 295 | 450 | 6 | 1.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.1148 | 85.3960 | 39.6066 | 69.0608 | 3450 | 590 | 3443 | 5250 | 4800 | 91.4286 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 36.5445 | 33.8941 | 39.6445 | 65.7686 | 1088 | 2122 | 1093 | 1664 | 1651 | 99.2188 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | het | 51.2283 | 72.3404 | 39.6552 | 84.3243 | 34 | 13 | 46 | 70 | 55 | 78.5714 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.8750 | 100.0000 | 39.7380 | 88.6830 | 1 | 0 | 182 | 276 | 65 | 23.5507 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 33.0811 | 28.3279 | 39.7508 | 61.8410 | 349 | 883 | 351 | 532 | 502 | 94.3609 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 21.3305 | 14.5749 | 39.7590 | 79.5062 | 36 | 211 | 33 | 50 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 52.5108 | 77.0492 | 39.8268 | 78.2486 | 47 | 14 | 92 | 139 | 4 | 2.8777 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 55.0794 | 89.0909 | 39.8618 | 59.0952 | 343 | 42 | 346 | 522 | 495 | 94.8276 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 53.6407 | 81.6652 | 39.9361 | 49.3327 | 11937 | 2680 | 12008 | 18060 | 17978 | 99.5460 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.6735 | 50.6428 | 39.9631 | 53.8471 | 1103 | 1075 | 3030 | 4552 | 3067 | 67.3770 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | het | 18.3007 | 11.8644 | 40.0000 | 93.4211 | 7 | 52 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | het | 17.8344 | 11.4754 | 40.0000 | 94.1406 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | het | 17.8344 | 11.4754 | 40.0000 | 94.2748 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | * | 12.5000 | 7.4074 | 40.0000 | 98.1132 | 2 | 25 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 40.0000 | 99.0381 | 0 | 0 | 20 | 30 | 1 | 3.3333 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 27.5862 | 21.0526 | 40.0000 | 91.3793 | 4 | 15 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |