PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33251-33300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 94.5455 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 92.8571 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 50.0000 | 100.0000 | 33.3333 | 99.1549 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 95.9459 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 33.3333 | 68.4211 | 0 | 1 | 2 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 33.3333 | 94.8276 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 89.2857 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 33.3333 | 96.7742 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 96.5517 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 47.4256 | 81.8182 | 33.3900 | 61.2010 | 1782 | 396 | 1769 | 3529 | 3376 | 95.6645 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.6441 | 89.1553 | 33.4464 | 63.7189 | 781 | 95 | 789 | 1570 | 1544 | 98.3439 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1893 | 11.5659 | 33.4554 | 78.2586 | 243 | 1858 | 274 | 545 | 283 | 51.9266 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.7567 | 52.0900 | 33.4737 | 59.2973 | 162 | 149 | 159 | 316 | 303 | 95.8861 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.1159 | 99.4924 | 33.4936 | 34.9322 | 196 | 1 | 209 | 415 | 385 | 92.7711 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 31.4068 | 29.5238 | 33.5463 | 77.9887 | 310 | 740 | 315 | 624 | 44 | 7.0513 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 42.3423 | 57.3171 | 33.5714 | 78.0220 | 47 | 35 | 47 | 93 | 26 | 27.9570 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.0725 | 30.6667 | 33.6134 | 68.6842 | 23 | 52 | 40 | 79 | 44 | 55.6962 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.9171 | 30.3578 | 33.6453 | 67.1740 | 806 | 1849 | 791 | 1560 | 1458 | 93.4615 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.5930 | 11.9082 | 33.6634 | 40.2367 | 83 | 614 | 102 | 201 | 155 | 77.1144 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 30.6011 | 28.0000 | 33.7349 | 46.7949 | 21 | 54 | 28 | 55 | 49 | 89.0909 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1444 | 17.6107 | 33.7493 | 43.2911 | 370 | 1731 | 649 | 1274 | 1040 | 81.6327 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 48.1114 | 83.3977 | 33.8073 | 56.3749 | 216 | 43 | 214 | 419 | 397 | 94.7494 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.5477 | 35.3061 | 33.8212 | 42.2578 | 173 | 317 | 647 | 1266 | 1039 | 82.0695 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 39.9479 | 48.7805 | 33.8235 | 55.5556 | 40 | 42 | 69 | 135 | 108 | 80.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 42.4438 | 56.8627 | 33.8583 | 68.1704 | 87 | 66 | 86 | 168 | 147 | 87.5000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 26.7404 | 22.0721 | 33.9130 | 42.0655 | 49 | 173 | 78 | 152 | 131 | 86.1842 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 9.6515 | 5.6250 | 33.9623 | 61.7329 | 27 | 453 | 36 | 70 | 34 | 48.5714 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 34.0000 | 87.9130 | 0 | 0 | 102 | 198 | 39 | 19.6970 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.4948 | 41.7896 | 34.0005 | 84.4865 | 2550 | 3552 | 2650 | 5144 | 58 | 1.1275 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 48.4716 | 84.3364 | 34.0089 | 80.1936 | 1093 | 203 | 1141 | 2214 | 143 | 6.4589 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 47.6401 | 79.3548 | 34.0369 | 66.9573 | 123 | 32 | 129 | 250 | 2 | 0.8000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 48.0237 | 81.0651 | 34.1176 | 68.8073 | 137 | 32 | 58 | 112 | 111 | 99.1071 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 34.1463 | 96.4004 | 0 | 0 | 14 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.8564 | 19.5402 | 34.1463 | 81.7778 | 17 | 70 | 14 | 27 | 16 | 59.2593 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.2791 | 62.9630 | 34.1463 | 81.0185 | 17 | 10 | 14 | 27 | 16 | 59.2593 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 41.6309 | 53.2787 | 34.1623 | 32.5088 | 260 | 228 | 261 | 503 | 475 | 94.4334 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 48.6704 | 84.3829 | 34.1974 | 80.6855 | 670 | 124 | 686 | 1320 | 25 | 1.8939 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.8101 | 60.7843 | 34.2466 | 81.0390 | 31 | 20 | 25 | 48 | 46 | 95.8333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 49.0937 | 86.6667 | 34.2466 | 60.9626 | 13 | 2 | 25 | 48 | 1 | 2.0833 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 46.3373 | 71.5686 | 34.2593 | 33.5385 | 73 | 29 | 74 | 142 | 132 | 92.9577 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 49.3231 | 87.8558 | 34.2857 | 65.7723 | 463 | 64 | 468 | 897 | 893 | 99.5541 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | homalt | 51.0638 | 100.0000 | 34.2857 | 66.3462 | 24 | 0 | 24 | 46 | 45 | 97.8261 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.2633 | 93.9024 | 34.3158 | 41.8605 | 77 | 5 | 163 | 312 | 287 | 91.9872 | |