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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32751-32800 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 18.3861 | 14.4397 | 25.3012 | 64.2755 | 67 | 397 | 63 | 186 | 4 | 2.1505 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 25.3333 | 95.0166 | 0 | 0 | 19 | 56 | 7 | 12.5000 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | homalt | 37.8738 | 75.0000 | 25.3333 | 81.1558 | 18 | 6 | 19 | 56 | 53 | 94.6429 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.3731 | 95.8437 | 0 | 0 | 17 | 50 | 8 | 16.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 16.8844 | 12.6126 | 25.5319 | 75.5463 | 56 | 388 | 60 | 175 | 113 | 64.5714 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 29.0131 | 33.3333 | 25.6842 | 96.3865 | 1 | 2 | 122 | 353 | 87 | 24.6459 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1882 | 12.9125 | 25.6972 | 75.4883 | 90 | 607 | 129 | 373 | 191 | 51.2064 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.4575 | 6.5574 | 25.8065 | 80.9816 | 8 | 114 | 8 | 23 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 4.7580 | 2.6205 | 25.8123 | 79.0152 | 131 | 4868 | 143 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 4.7580 | 2.6205 | 25.8123 | 79.0152 | 131 | 4868 | 143 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 25.8760 | 72.2513 | 0 | 0 | 96 | 275 | 70 | 25.4545 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.0000 | 35.2941 | 26.0870 | 98.9890 | 6 | 11 | 6 | 17 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.0000 | 85.7143 | 26.0870 | 33.0097 | 18 | 3 | 18 | 51 | 51 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.0167 | 3.3981 | 26.2295 | 42.4528 | 7 | 199 | 32 | 90 | 74 | 82.2222 | |
| anovak-vg | INDEL | I1_5 | HG002compoundhet | homalt | 40.4620 | 88.4498 | 26.2307 | 64.1465 | 291 | 38 | 1071 | 3012 | 2451 | 81.3745 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 33.9034 | 47.8673 | 26.2467 | 55.9028 | 101 | 110 | 100 | 281 | 269 | 95.7295 | |
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | het | 21.2896 | 17.8947 | 26.2741 | 51.2425 | 153 | 702 | 531 | 1490 | 935 | 62.7517 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 41.6667 | 100.0000 | 26.3158 | 76.2500 | 6 | 0 | 5 | 14 | 4 | 28.5714 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.7774 | 89.1980 | 26.4300 | 49.8268 | 545 | 66 | 536 | 1492 | 1475 | 98.8606 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 11.1206 | 7.0388 | 26.4706 | 75.6646 | 58 | 766 | 63 | 175 | 113 | 64.5714 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.5632 | 96.5217 | 26.4836 | 86.5727 | 1221 | 44 | 1254 | 3481 | 67 | 1.9247 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | het | 36.6885 | 59.5745 | 26.5060 | 84.0077 | 28 | 19 | 22 | 61 | 60 | 98.3607 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.4402 | 94.0217 | 26.5770 | 81.1312 | 1038 | 66 | 1087 | 3003 | 81 | 2.6973 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.8005 | 87.2340 | 26.6272 | 32.1285 | 41 | 6 | 45 | 124 | 115 | 92.7419 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 26.6667 | 92.5743 | 0 | 0 | 4 | 11 | 1 | 9.0909 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 10.3004 | 6.3830 | 26.6667 | 77.2727 | 3 | 44 | 4 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 26.6667 | 96.0212 | 0 | 0 | 4 | 11 | 6 | 54.5455 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 26.6667 | 75.4098 | 0 | 1 | 4 | 11 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 21.5835 | 18.1202 | 26.6833 | 26.4895 | 214 | 967 | 214 | 588 | 544 | 92.5170 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | het | 38.7440 | 70.5882 | 26.6993 | 68.3093 | 600 | 250 | 546 | 1499 | 1487 | 99.1995 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 32.5779 | 41.6667 | 26.7442 | 96.8657 | 115 | 161 | 115 | 315 | 15 | 4.7619 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.7820 | 95.3547 | 26.7520 | 84.5618 | 2258 | 110 | 2340 | 6407 | 146 | 2.2788 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 38.5511 | 68.5714 | 26.8126 | 57.5000 | 336 | 154 | 196 | 535 | 531 | 99.2523 | |
| gduggal-bwavard | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 26.8657 | 91.2189 | 0 | 0 | 18 | 49 | 21 | 42.8571 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 26.8946 | 89.0519 | 0 | 0 | 291 | 791 | 71 | 8.9760 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 22.1585 | 18.8343 | 26.9076 | 54.2967 | 740 | 3189 | 737 | 2002 | 1995 | 99.6503 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 28.0467 | 29.2683 | 26.9231 | 53.5714 | 12 | 29 | 14 | 38 | 20 | 52.6316 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5758 | 15.3515 | 27.0073 | 33.7097 | 107 | 590 | 111 | 300 | 272 | 90.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.3724 | 88.2160 | 27.0230 | 51.3251 | 539 | 72 | 541 | 1461 | 1457 | 99.7262 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 27.0270 | 90.4393 | 0 | 0 | 10 | 27 | 15 | 55.5556 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 34.7826 | 48.7805 | 27.0270 | 82.1256 | 20 | 21 | 20 | 54 | 49 | 90.7407 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.5532 | 100.0000 | 27.0270 | 90.7500 | 6 | 0 | 10 | 27 | 1 | 3.7037 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 42.6230 | 100.0000 | 27.0833 | 34.2466 | 13 | 0 | 13 | 35 | 31 | 88.5714 | |