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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32701-32750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 25.0000 | 95.2941 | 0 | 0 | 1 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 97.0149 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 96.4602 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.5904 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.2789 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.8836 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.5460 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.3193 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 25.0000 | 98.0769 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 94.3128 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 25.0000 | 94.1463 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0499 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9822 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0431 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9744 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 40.0000 | 100.0000 | 25.0000 | 96.3964 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 30.7692 | 40.0000 | 25.0000 | 99.2747 | 2 | 3 | 2 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 97.3510 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 25.0000 | 95.2941 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 97.8261 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.6387 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 94.1176 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 91.3669 | 0 | 0 | 3 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.0000 | 100.0000 | 25.0000 | 95.4545 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.1577 | 0 | 0 | 19 | 57 | 8 | 14.0351 | |
| ciseli-custom | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.2222 | 0 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 25.0000 | 25.0000 | 25.0000 | 98.6486 | 1 | 3 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 6.6667 | 3.8462 | 25.0000 | 97.1223 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3043 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 25.0000 | 90.2439 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.9057 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 78.9474 | 0 | 0 | 1 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 66.6667 | 0 | 0 | 1 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.1366 | 95.2847 | 0 | 0 | 46 | 137 | 45 | 32.8467 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 35.1538 | 58.3333 | 25.1572 | 36.4000 | 14 | 10 | 40 | 119 | 113 | 94.9580 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 25.1969 | 72.4113 | 0 | 0 | 96 | 285 | 78 | 27.3684 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 39.4150 | 90.1961 | 25.2174 | 86.3339 | 46 | 5 | 58 | 172 | 1 | 0.5814 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 36.9440 | 68.9906 | 25.2262 | 52.0434 | 663 | 298 | 669 | 1983 | 1976 | 99.6470 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.2874 | 96.0490 | 0 | 0 | 22 | 65 | 10 | 15.3846 | |