PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32101-32150 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 16.5775 | 100.0000 | 9.0379 | 62.9989 | 31 | 0 | 31 | 312 | 304 | 97.4359 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 16.6667 | 100.0000 | 9.0909 | 84.9315 | 1 | 0 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 15.3846 | 50.0000 | 9.0909 | 81.0345 | 1 | 1 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 9.0909 | 81.6667 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | * | 14.8148 | 40.0000 | 9.0909 | 92.7632 | 4 | 6 | 1 | 10 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 16.6667 | 100.0000 | 9.0909 | 90.8333 | 1 | 0 | 1 | 10 | 9 | 90.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 9.0909 | 97.3430 | 0 | 0 | 2 | 20 | 4 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | HG002compoundhet | homalt | 16.8421 | 100.0000 | 9.1954 | 61.3333 | 8 | 0 | 8 | 79 | 79 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 9.2511 | 83.1727 | 0 | 0 | 21 | 206 | 16 | 7.7670 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0213 | 100.0000 | 9.3023 | 88.4409 | 6 | 0 | 4 | 39 | 1 | 2.5641 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 16.6796 | 78.5714 | 9.3301 | 83.9601 | 33 | 9 | 39 | 379 | 6 | 1.5831 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | homalt | 17.1429 | 100.0000 | 9.3750 | 81.1765 | 3 | 0 | 3 | 29 | 28 | 96.5517 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.4017 | 83.5211 | 0 | 0 | 22 | 212 | 16 | 7.5472 | |
| jmaeng-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 17.2702 | 100.0000 | 9.4512 | 62.3853 | 31 | 0 | 31 | 297 | 295 | 99.3266 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 17.3913 | 100.0000 | 9.5238 | 78.5714 | 2 | 0 | 2 | 19 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 9.5238 | 93.2692 | 0 | 0 | 2 | 19 | 7 | 36.8421 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 17.3977 | 88.6010 | 9.6459 | 80.7136 | 342 | 44 | 365 | 3419 | 49 | 1.4332 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 9.7065 | 87.3897 | 0 | 0 | 43 | 400 | 22 | 5.5000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 9.7561 | 77.0950 | 0 | 0 | 4 | 37 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | homalt | 15.7021 | 38.7097 | 9.8485 | 69.8630 | 12 | 19 | 13 | 119 | 118 | 99.1597 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 10.0000 | 82.7586 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 18.1818 | 100.0000 | 10.0000 | 75.6098 | 1 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | * | 18.1818 | 100.0000 | 10.0000 | 71.4286 | 1 | 0 | 1 | 9 | 4 | 44.4444 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 10.0000 | 89.5288 | 0 | 0 | 4 | 36 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 10.0000 | 89.5288 | 0 | 0 | 4 | 36 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 10.0000 | 97.7528 | 0 | 0 | 1 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 10.0000 | 96.0784 | 0 | 0 | 1 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 10.0000 | 98.2699 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 10.0000 | 98.2818 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 18.3976 | 100.0000 | 10.1307 | 62.6829 | 31 | 0 | 31 | 275 | 274 | 99.6364 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | homalt | 18.5075 | 100.0000 | 10.1974 | 63.1068 | 31 | 0 | 31 | 273 | 272 | 99.6337 | |
| ckim-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 18.5075 | 100.0000 | 10.1974 | 63.1068 | 31 | 0 | 31 | 273 | 272 | 99.6337 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 18.3051 | 87.0968 | 10.2273 | 63.1285 | 27 | 4 | 27 | 237 | 215 | 90.7173 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 18.7311 | 100.0000 | 10.3333 | 64.1577 | 31 | 0 | 31 | 269 | 268 | 99.6283 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 10.5263 | 90.7767 | 0 | 0 | 2 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 10.5727 | 87.5855 | 0 | 0 | 48 | 406 | 22 | 5.4187 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | homalt | 19.1571 | 100.0000 | 10.5932 | 65.6477 | 31 | 0 | 25 | 211 | 211 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 19.1559 | 90.9502 | 10.7054 | 81.4012 | 201 | 20 | 214 | 1785 | 28 | 1.5686 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 17.9562 | 55.4054 | 10.7143 | 41.9355 | 82 | 66 | 81 | 675 | 674 | 99.8519 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0940 | 41.6667 | 10.7527 | 42.2360 | 10 | 14 | 10 | 83 | 83 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 19.2440 | 90.3226 | 10.7692 | 63.7883 | 28 | 3 | 28 | 232 | 206 | 88.7931 | |
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 19.5122 | 100.0000 | 10.8108 | 46.5060 | 24 | 0 | 24 | 198 | 197 | 99.4949 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 10.8949 | 86.7866 | 0 | 1 | 28 | 229 | 83 | 36.2445 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 11.1111 | 98.2387 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |