PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32001-32050 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 9.6000 | 100.0000 | 5.0420 | 75.4132 | 6 | 0 | 6 | 113 | 2 | 1.7699 | |
| ciseli-custom | INDEL | I1_5 | HG002compoundhet | homalt | 9.7782 | 77.5076 | 5.2183 | 58.7244 | 255 | 74 | 257 | 4668 | 4563 | 97.7506 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 5.2632 | 96.2963 | 0 | 0 | 1 | 18 | 4 | 22.2222 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 5.2632 | 75.0000 | 0 | 0 | 1 | 18 | 2 | 11.1111 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 10.1449 | 100.0000 | 5.3435 | 81.7294 | 9 | 0 | 7 | 124 | 2 | 1.6129 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.1695 | 100.0000 | 5.3571 | 67.2515 | 3 | 0 | 3 | 53 | 52 | 98.1132 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.1695 | 100.0000 | 5.3571 | 68.1818 | 3 | 0 | 3 | 53 | 52 | 98.1132 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 5.3812 | 85.0736 | 0 | 0 | 12 | 211 | 81 | 38.3886 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.3448 | 100.0000 | 5.4545 | 83.2317 | 3 | 0 | 3 | 52 | 49 | 94.2308 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 3.3784 | 2.4272 | 5.5556 | 80.2198 | 5 | 201 | 1 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 10.5263 | 100.0000 | 5.5556 | 72.7273 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 10.5263 | 100.0000 | 5.5556 | 77.5000 | 2 | 0 | 2 | 34 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.7143 | 100.0000 | 5.6604 | 76.6520 | 3 | 0 | 3 | 50 | 49 | 98.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 10.6178 | 83.3333 | 5.6701 | 81.1174 | 55 | 11 | 55 | 915 | 8 | 0.8743 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| jlack-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 11.0517 | 100.0000 | 5.8491 | 57.0502 | 31 | 0 | 31 | 499 | 497 | 99.5992 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002compoundhet | homalt | 11.1111 | 100.0000 | 5.8824 | 76.6055 | 3 | 0 | 3 | 48 | 47 | 97.9167 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 5.8824 | 68.5185 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 5.8824 | 97.5398 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 5.8824 | 97.5540 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| eyeh-varpipe | INDEL | D1_5 | HG002compoundhet | homalt | 11.1474 | 96.9072 | 5.9138 | 65.1721 | 282 | 9 | 243 | 3866 | 3861 | 99.8707 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.0781 | 70.0000 | 6.0150 | 83.1858 | 7 | 3 | 8 | 125 | 1 | 0.8000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.4943 | 74.0741 | 6.2305 | 81.1065 | 20 | 7 | 20 | 301 | 3 | 0.9967 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 8.0000 | 11.1111 | 6.2500 | 76.8116 | 3 | 24 | 1 | 15 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 6.2500 | 97.3899 | 0 | 0 | 1 | 15 | 2 | 13.3333 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 11.7647 | 100.0000 | 6.2500 | 67.3469 | 1 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 11.7647 | 100.0000 | 6.2500 | 67.3469 | 1 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 6.2500 | 79.7468 | 0 | 0 | 1 | 15 | 3 | 20.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 6.2500 | 88.7324 | 0 | 0 | 2 | 30 | 16 | 53.3333 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 11.7647 | 100.0000 | 6.2500 | 80.0000 | 1 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 11.7728 | 84.3137 | 6.3282 | 78.4662 | 86 | 16 | 86 | 1273 | 9 | 0.7070 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | homalt | 11.4804 | 61.2903 | 6.3333 | 53.7037 | 19 | 12 | 19 | 281 | 260 | 92.5267 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.7249 | 76.4706 | 6.3492 | 79.5676 | 13 | 4 | 12 | 177 | 2 | 1.1299 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | homalt | 12.0000 | 100.0000 | 6.3830 | 77.2947 | 3 | 0 | 3 | 44 | 43 | 97.7273 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | homalt | 11.9676 | 93.5484 | 6.3927 | 50.6201 | 29 | 2 | 28 | 410 | 408 | 99.5122 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 11.9658 | 93.3333 | 6.3927 | 89.8892 | 14 | 1 | 14 | 205 | 4 | 1.9512 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | homalt | 11.7284 | 61.2903 | 6.4846 | 55.1988 | 19 | 12 | 19 | 274 | 248 | 90.5109 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | homalt | 12.1241 | 90.3226 | 6.4982 | 46.3178 | 28 | 3 | 36 | 518 | 433 | 83.5907 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 8.8851 | 13.8889 | 6.5319 | 87.2673 | 40 | 248 | 42 | 601 | 6 | 0.9983 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | het | 11.9006 | 62.5000 | 6.5764 | 49.1309 | 130 | 78 | 102 | 1449 | 1446 | 99.7930 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4706 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4871 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 12.5000 | 100.0000 | 6.6667 | 88.9706 | 1 | 0 | 1 | 14 | 11 | 78.5714 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | homalt | 12.7321 | 100.0000 | 6.7989 | 76.0353 | 24 | 0 | 24 | 329 | 328 | 99.6960 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | homalt | 12.7119 | 96.7742 | 6.8027 | 58.3176 | 30 | 1 | 30 | 411 | 411 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 13.3333 | 100.0000 | 7.1429 | 86.0000 | 1 | 0 | 1 | 13 | 0 | 0.0000 | |