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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
31901-31950 / 86044 show all
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
1.8692
100.0000
0.9434
71.7333
1011052
1.9048
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
1.9417
100.0000
0.9804
62.5000
1011012
1.9802
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
1.9417
100.0000
0.9804
62.5000
1011012
1.9802
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
2.4691
100.0000
1.2500
60.9756
101791
1.2658
eyeh-varpipeINDELI16_PLUSHG002compoundhethomalt
2.4742
66.6667
1.2605
25.1572
213235234
99.5745
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200*
2.5000
100.0000
1.2658
65.6522
101781
1.2821
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
2.5316
100.0000
1.2821
72.3404
101772
2.5974
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
2.8369
100.0000
1.4388
74.9550
2021373
2.1898
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
2.8369
100.0000
1.4388
74.9550
2021373
2.1898
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200het
2.8571
100.0000
1.4493
62.7027
101681
1.4706
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_51to200het
2.9851
80.0000
1.5209
74.7722
8285182
0.3861
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_51to200het
3.0372
74.0741
1.5504
75.3723
2072012704
0.3150
ciseli-customINDELI16_PLUSHG002compoundhet*
0.6022
0.3733
1.5564
60.4311
821358506462
91.3043
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.0000
1.5625
65.4054
0021260
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200het
3.0730
70.5882
1.5707
75.7691
125127522
0.2660
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.2258
100.0000
1.6393
75.6487
2021202
1.6667
eyeh-varpipeINDELI16_PLUSHG002compoundhethet
2.3810
4.2553
1.6529
50.2058
2452119119
100.0000
gduggal-snapfbINDELD6_15HG002compoundhethomalt
3.3072
70.8333
1.6931
58.2597
17716929928
99.8924
gduggal-snapfbINDELI6_15HG002compoundhethomalt
3.2572
38.7097
1.7002
37.4879
121911636636
100.0000
cchapple-customINDELI16_PLUSHG002compoundhethomalt
3.4483
100.0000
1.7544
69.5187
3015655
98.2143
qzeng-customINDELC16_PLUS*het
0.0000
0.0000
1.7730
70.9278
0052770
0.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
3.4199
30.9524
1.8100
87.7069
1329168680
0.0000
ckim-isaacINDELI16_PLUSHG002compoundhethomalt
3.4483
33.3333
1.8182
61.5385
1215453
98.1481
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
jpowers-varprowlINDELI16_PLUSHG002compoundhethet
3.5500
25.5319
1.9076
52.7962
123519977973
99.5906
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
3.8462
100.0000
1.9608
75.9434
2021003
3.0000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
3.8462
100.0000
1.9608
75.9434
2021003
3.0000
gduggal-bwafbINDELI16_PLUSHG002compoundhethomalt
3.8462
66.6667
1.9802
47.1204
2129998
98.9899
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200*
4.1580
76.9231
2.1368
79.9012
206209167
0.7642
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
3.5430
9.8039
2.1622
93.6492
54641810
0.0000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_51to200*
4.2984
80.9524
2.2078
79.4447
3483415069
0.5976
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
0.0000
2.2099
73.5766
0041770
0.0000
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_51to200*
4.3344
87.5000
2.2222
78.2983
142146163
0.4870
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
3.7037
11.1111
2.2222
94.8276
3241440
0.0000
jlack-gatkINDELI16_PLUSHG002compoundhethomalt
4.5113
100.0000
2.3077
65.0538
303127123
96.8504
ciseli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
4.4684
35.0877
2.3861
92.1778
20372290012
1.3333
ghariani-varprowlINDELI16_PLUSHG002compoundhethet
4.7472
34.0426
2.5515
55.6957
163126993986
99.2951
gduggal-snapplatINDELI6_15HG002compoundhethomalt
4.7937
25.8065
2.6423
56.0714
82313479433
90.3967
ghariani-varprowlINDELI16_PLUSHG002compoundhet*
1.7907
1.3532
2.6460
56.7653
2921142910671059
99.2502
gduggal-bwavardINDELI16_PLUSHG002compoundhethet
5.1421
59.5745
2.6870
48.2525
28193713401253
93.5075
qzeng-customINDELC16_PLUS**
0.0000
0.0000
2.6895
75.5383
00113980
0.0000
qzeng-customINDELI16_PLUSHG002compoundhethomalt
5.3812
100.0000
2.7650
59.0566
306211173
81.9905
eyeh-varpipeINDELC6_15HG002compoundhethomalt
0.0000
0.0000
2.8571
84.2342
0013430
88.2353
ciseli-customINDEL*HG002compoundhethomalt
5.5419
79.0087
2.8717
55.4798
5421445591890717855
94.4359
gduggal-bwavardINDELI16_PLUSHG002compoundhet*
2.2297
1.8199
2.8777
49.0469
3921044013501263
93.5556
gduggal-snapplatINDELD6_15HG002compoundhethomalt
5.2905
29.1667
2.9091
54.3189
7178267226
84.6442
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
2.9412
89.6657
001332
6.0606