PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 301 302 303 304 305 306 307 308 309 ... 1720 1721 » 15201-15250 / 86044 show all
anovak-vg	INDEL	D6_15	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	6	0	0	0
anovak-vg	INDEL	D6_15	map_l125_m1_e0	hetalt	0.0000	31.5789	0.0000	0.0000	6	13	0	0	0
anovak-vg	INDEL	D6_15	map_l125_m2_e0	hetalt	0.0000	31.5789	0.0000	0.0000	6	13	0	0	0
anovak-vg	INDEL	D6_15	map_l125_m2_e1	hetalt	0.0000	30.0000	0.0000	0.0000	6	14	0	0	0
anovak-vg	INDEL	D6_15	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	5	0	0	0
anovak-vg	INDEL	D6_15	map_l150_m1_e0	hetalt	0.0000	25.0000	0.0000	0.0000	2	6	0	0	0
anovak-vg	INDEL	D6_15	map_l150_m2_e0	hetalt	0.0000	25.0000	0.0000	0.0000	2	6	0	0	0
anovak-vg	INDEL	D6_15	map_l150_m2_e1	hetalt	0.0000	22.2222	0.0000	0.0000	2	7	0	0	0
anovak-vg	INDEL	D6_15	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
anovak-vg	INDEL	D6_15	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
anovak-vg	INDEL	D6_15	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
anovak-vg	INDEL	D6_15	map_siren	hetalt	0.0000	25.2525	0.0000	0.0000	25	74	0	0	0
anovak-vg	INDEL	D6_15	segdup	hetalt	0.0000	18.3673	0.0000	0.0000	9	40	0	0	0
anovak-vg	INDEL	D6_15	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
anovak-vg	INDEL	I16_PLUS	*	hetalt	0.0000	7.1020	0.0000	0.0000	149	1949	0	0	0
anovak-vg	INDEL	I16_PLUS	HG002complexvar	hetalt	0.0000	5.6716	0.0000	0.0000	19	316	0	0	0
anovak-vg	INDEL	I16_PLUS	HG002compoundhet	hetalt	0.0000	7.1190	0.0000	0.0000	149	1944	0	0	0
anovak-vg	INDEL	I16_PLUS	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	func_cds	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	86	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	4.6312	0.0000	0.0000	27	556	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	4.0971	0.0000	0.0000	27	632	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	18	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	5.7143	0.0000	0.0000	2	33	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	10.0000	0.0000	0.0000	2	18	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*		0.0000	0.0000	76.4706	0	87	0	4	2	50.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het		0.0000	0.0000	87.5000	0	27	0	1	1	100.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	66.6667	0	1	0	3	1	33.3333
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	3.5191	0.0000	0.0000	12	329	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	4.1958	0.0000	0.0000	12	274	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	3.6842	0.0000	0.0000	14	366	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	4.0971	0.0000	0.0000	27	632	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	1.4337	0.0000	0.0000	4	275	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*		0.0000	0.0000	0.0000	0	4	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het		0.0000	0.0000	0.0000	0	2	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	10.7143	0.0000	0.0000	3	25	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	5.7143	0.0000	0.0000	10	165	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*		0.0000	0.0000	50.0000	0	26	0	2	1	50.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge