PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
ckim-isaacINDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
94.1176
10100
ckim-isaacINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
66.6667
50.0000
100.0000
45.8333
14141300
ckim-isaacINDELI1_5map_l150_m1_e0hetalt
87.5000
77.7778
100.0000
94.8905
72700
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtvmap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0hetalt
66.6667
50.0000
100.0000
94.7368
11100
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
ckim-vqsrSNPtimap_l150_m1_e0hetalt
42.1053
26.6667
100.0000
96.1538
411400
dgrover-gatkINDELD6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
90.6977
80800
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
75.7225
4224200
dgrover-gatkSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
egarrison-hhgaINDELD6_15map_l150_m0_e0hetalt
57.1429
40.0000
100.0000
96.4286
23100
eyeh-varpipeINDELC1_5map_l150_m1_e0hetalt
0.0000
0.0000
100.0000
99.1071
00100
eyeh-varpipeINDELD6_15map_l100_m1_e0hetalt
38.0952
23.5294
100.0000
84.7826
16522800
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
gduggal-bwafbINDELD6_15map_l125_m1_e0hetalt
94.4444
89.4737
100.0000
90.6250
172300
gduggal-bwafbSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
86.1538
90900
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
gduggal-bwaplatINDELD6_15map_l150_m2_e1hetalt
71.4286
55.5556
100.0000
96.6216
54500
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7342
10100
gduggal-bwaplatSNP*map_l125_m2_e1hetalt
66.6667
50.0000
100.0000
93.3628
15151500
gduggal-bwaplatSNPtvHG002compoundhethetalt
96.3319
92.9234
100.0000
22.7493
8016179800
gduggal-snapfbSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.2381
40400
gduggal-snapplatSNPtimap_l250_m1_e0hetalt
85.7143
75.0000
100.0000
95.0000
31300
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.6301
97.2973
100.0000
81.3953
7227200
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
hfeng-pmm1SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
hfeng-pmm2INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8400
10100
hfeng-pmm2INDELD6_15map_l100_m0_e0hetalt
97.2973
94.7368
100.0000
81.8182
1811800
hfeng-pmm2SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0297
30300
hfeng-pmm3INDELD16_PLUSHG002compoundhethetalt
96.6774
93.5685
100.0000
26.2024
1804124191800
hfeng-pmm3INDELD6_15map_l100_m2_e1hetalt
93.4307
87.6712
100.0000
73.7705
6496400
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.8033
84.8485
100.0000
47.2906
3085532100
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.6667
30300
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.2052
83.8323
100.0000
62.7604
1402714300
jli-customINDELI6_15map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
87.8788
80800
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jmaeng-gatkINDEL*map_l125_m2_e0hetalt
93.6709
88.0952
100.0000
93.7710
3753700
jmaeng-gatkINDELD16_PLUSmap_l100_m2_e0hetalt
91.6667
84.6154
100.0000
78.1818
2242400
jmaeng-gatkINDELD1_5segduphetalt
98.0392
96.1538
100.0000
95.6596
5025100
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
67.2414
1911900
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.5450
95.2077
100.0000
30.5361
2981529800
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.7711
1201200