PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.5760
5305300
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
ltrigg-rtg1INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
96.9849
00600
astatham-gatkINDELD6_15map_l125_m2_e0hetalt
97.2973
94.7368
100.0000
86.9565
1811800
astatham-gatkSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
75.6303
2912900
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
65.1163
1501500
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.0519
30300
ltrigg-rtg2INDELC16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
100.0000
95.1613
00300
asubramanian-gatkINDELD1_5map_l125_m2_e0hetalt
96.5517
93.3333
100.0000
95.9770
1411400
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ltrigg-rtg2INDELD1_5map_l100_m0_e0hetalt
92.3077
85.7143
100.0000
95.7198
1221100
ltrigg-rtg2INDELD6_15segduphetalt
96.8421
93.8776
100.0000
90.1468
4634700
asubramanian-gatkINDELI6_15map_l125_m2_e0hetalt
93.3333
87.5000
100.0000
89.2308
71700
bgallagher-sentieonINDEL*map_l125_m2_e0hetalt
97.5610
95.2381
100.0000
92.5512
4024000
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.6170
30300
mlin-fermikitINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
98.6842
10100
bgallagher-sentieonINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
92.5490
1901900
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
mlin-fermikitINDELI1_5map_l125_m2_e1hetalt
77.4194
63.1579
100.0000
89.9160
1271200
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
83.3333
1201200
bgallagher-sentieonSNPtvmap_l125_m2_e0hetalt
96.5517
93.3333
100.0000
76.0684
2822800
mlin-fermikitSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
90.0000
10100
mlin-fermikitSNPtvmap_l125_m2_e1hetalt
46.1538
30.0000
100.0000
76.9231
921900
ndellapenna-hhgaINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
94.0972
1701700
ndellapenna-hhgaINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
qzeng-customINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.7778
51300
qzeng-customINDELI1_5map_l125_m2_e1hetalt
88.2353
78.9474
100.0000
91.8605
1541400
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
qzeng-customSNPtvmap_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
ckim-dragenINDELD6_15map_l150_m1_e0hetalt
93.3333
87.5000
100.0000
89.2308
71700
raldana-dualsentieonINDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ckim-dragenINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6667
84.6154
100.0000
57.1429
3363300
raldana-dualsentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.0588
94.2857
100.0000
65.3527
1651016700
ckim-dragenSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
83.0409
2912900
raldana-dualsentieonINDELI1_5map_l150_m2_e0hetalt
94.1176
88.8889
100.0000
95.2663
81800
ckim-dragenSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
raldana-dualsentieonSNPtvmap_l150_m1_e0hetalt
94.7368
90.0000
100.0000
74.2857
1821800
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
55.5556
1201600
ckim-gatkINDELD1_5map_l150_m1_e0hetalt
72.7273
57.1429
100.0000
98.3607
43400
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1677
87.2093
100.0000
76.4205
75118300
ckim-gatkINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
91.6667
30300
rpoplin-dv42INDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
87.5000
21200
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-isaacINDEL*map_l150_m1_e0hetalt
80.0000
66.6667
100.0000
94.9807
1471300