PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85901-85950 / 86044 show all
eyeh-varpipeINDELC1_5map_l150_m0_e0homalt
0.0000
0.0000
100.0000
95.8333
00700
gduggal-bwaplatINDELD6_15map_l150_m2_e0homalt
78.2609
64.2857
100.0000
90.5263
18101800
gduggal-bwavardINDELC1_5map_l250_m2_e0homalt
0.0000
0.0000
100.0000
97.7778
00200
gduggal-bwavardINDELD6_15map_l125_m2_e0homalt
89.2308
80.5556
100.0000
84.6591
2972700
gduggal-snapfbINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8589
23200
gduggal-snapplatINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
99.9274
05100
gduggal-snapplatINDELD6_15map_l100_m2_e1homalt
45.9770
29.8507
100.0000
93.6364
20471400
gduggal-snapvardINDELC1_5map_l125_m2_e1homalt
0.0000
0.0000
100.0000
96.5418
001200
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
98.9796
20100
ghariani-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8936
14100
ghariani-varprowlINDELI6_15func_cdshomalt
88.8889
80.0000
100.0000
33.3333
1231200
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3399
20200
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
32.2581
2102100
hfeng-pmm3INDELD6_15map_l100_m2_e0homalt
98.4375
96.9231
100.0000
84.0909
6326300
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.8073
6806800
jlack-gatkINDELD6_15map_l100_m2_e0homalt
99.2248
98.4615
100.0000
85.7143
6416400
jlack-gatkINDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.8370
1901900
jli-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jli-customINDELI6_15map_l125_m2_e0homalt
96.5517
93.3333
100.0000
91.6168
1411400
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.8750
22300
ltrigg-rtg2INDELI6_15map_l125_m0_e0*
84.6154
73.3333
100.0000
91.9708
1141100
mlin-fermikitINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8962
10100
ndellapenna-hhgaINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
59.3750
1301300
ciseli-customINDELI16_PLUStech_badpromoters*
40.0000
25.0000
100.0000
80.0000
13100
raldana-dualsentieonINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9969
10100
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.0228
98.0645
100.0000
82.5740
152315300
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
40.0000
25.0000
100.0000
99.3590
13100
gduggal-bwaplatINDELD6_15map_l150_m2_e1*
75.9124
61.1765
100.0000
96.6858
52335200
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.9532
10100
gduggal-snapvardINDELI16_PLUStech_badpromoters*
0.0000
0.0000
100.0000
50.0000
04100
hfeng-pmm2INDEL*decoy*
100.0000
100.0000
100.0000
99.9312
1001000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
96.2617
81800
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
97.4359
95.0000
100.0000
99.3781
1911900
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.6098
90900
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4350
98.8764
100.0000
76.3441
8818800
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.0588
10200
ltrigg-rtg2INDELI6_15map_l125_m0_e0het
71.4286
55.5556
100.0000
92.0635
54500
ndellapenna-hhgaINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
raldana-dualsentieonINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9951
10100
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
85.2381
155015500
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.1870
98.3871
100.0000
85.9091
6116200
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
99.5327
11100
gduggal-bwaplatINDELD6_15map_l150_m2_e1het
74.6667
59.5745
100.0000
97.7162
28192800
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
84.1121
72.5806
100.0000
90.6832
45174500
gduggal-snapvardINDELI16_PLUStech_badpromotershet
0.0000
0.0000
100.0000
50.0000
02100
hfeng-pmm2INDEL*decoyhet
100.0000
100.0000
100.0000
99.9394
60600
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
95.6522
91.6667
100.0000
99.3844
1111100
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
95.8904
61600
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4097
1201200
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.6154
70700