PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85851-85900 / 86044 show all
hfeng-pmm2SNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
79.7297
1501500
hfeng-pmm3INDELD6_15map_l100_m2_e0hetalt
94.5736
89.7059
100.0000
73.5931
6176100
hfeng-pmm3INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.3510
40400
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
98.0392
96.1538
100.0000
60.1562
5025100
hfeng-pmm3SNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
79.7297
1501500
jlack-gatkINDELI16_PLUSsegduphetalt
85.7143
75.0000
100.0000
98.0645
31300
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
61.7188
4844900
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
43.4783
1111300
jli-customINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jli-customINDELI6_15map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
87.5000
80800
jli-customSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jmaeng-gatkINDEL*map_l125_m1_e0hetalt
93.3333
87.5000
100.0000
93.2692
3553500
jmaeng-gatkINDELD16_PLUSmap_l100_m1_e0hetalt
91.6667
84.6154
100.0000
77.6699
2242300
jmaeng-gatkINDELD1_5map_sirenhetalt
92.9936
86.9048
100.0000
91.3507
73117300
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.0588
94.2857
100.0000
76.1905
3323500
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.6364
51500
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
99.5842
20200
jpowers-varprowlINDELD1_5tech_badpromotershomalt
80.0000
66.6667
100.0000
40.0000
63600
jpowers-varprowlINDELI6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
96.5517
12100
astatham-gatkINDELD6_15map_l125_m1_e0homalt
98.5075
97.0588
100.0000
89.2508
3313300
ltrigg-rtg1INDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
92.4528
1201200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg1INDELI16_PLUSmap_l125_m0_e0homalt
66.6667
50.0000
100.0000
88.8889
11100
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.0952
1301300
asubramanian-gatkINDELI6_15map_l125_m1_e0homalt
88.8889
80.0000
100.0000
93.9394
1231200
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.5414
91.4634
100.0000
66.2100
7577400
ltrigg-rtg2INDELI6_15map_l100_m2_e1homalt
96.8750
93.9394
100.0000
80.8917
3123000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4631
98.9319
100.0000
77.5605
148216150300
cchapple-customINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
100.0000
88.0952
002000
cchapple-customINDELI16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
97.8417
30300
ckim-dragenINDELD6_15map_l150_m0_e0homalt
92.3077
85.7143
100.0000
96.4072
61600
raldana-dualsentieonSNP*func_cdshomalt
99.9928
99.9857
100.0000
20.6414
69781697800
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7391
60600
ckim-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
ckim-gatkINDELI6_15map_l150_m0_e0homalt
85.7143
75.0000
100.0000
96.0526
31300
rpoplin-dv42INDELI16_PLUSmap_l100_m0_e0homalt
66.6667
50.0000
100.0000
90.9091
11100
ckim-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1183
526510526500
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.4082
90900
ckim-isaacINDELD6_15func_cdshomalt
95.6522
91.6667
100.0000
54.1667
1111100
ckim-isaacSNP*func_cdshomalt
99.3365
98.6818
100.0000
18.1191
688792688700
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
91.9355
51500
ckim-isaacSNPtvmap_l150_m0_e0homalt
57.8158
40.6627
100.0000
71.4889
54078854000
ckim-vqsrINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.7273
7407400
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.2424
10100
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9459
1501500
ckim-vqsrSNPtimap_l150_m0_e0homalt
33.4238
20.0652
100.0000
93.2216
554220755400
dgrover-gatkINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400
dgrover-gatkINDELD6_15map_l150_m0_e0homalt
92.3077
85.7143
100.0000
95.6204
61600
dgrover-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.4094
119011900