PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85801-85850 / 86044 show all
bgallagher-sentieonSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
mlin-fermikitINDELI1_5map_l125_m2_e0hetalt
77.4194
63.1579
100.0000
89.6552
1271200
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
mlin-fermikitSNP*HG002compoundhethetalt
97.1360
94.4316
100.0000
20.8171
8144881400
bgallagher-sentieonSNPtvmap_l125_m1_e0hetalt
96.5517
93.3333
100.0000
71.4286
2822800
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.6522
91.6667
100.0000
81.6667
1111100
mlin-fermikitSNPtvmap_l125_m2_e0hetalt
46.1538
30.0000
100.0000
76.3158
921900
ndellapenna-hhgaINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.8000
40400
qzeng-customINDEL*map_l250_m2_e0hetalt
90.9091
83.3333
100.0000
97.7444
51300
qzeng-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
50.0000
00100
qzeng-customINDELI1_5map_l125_m2_e0hetalt
88.2353
78.9474
100.0000
91.7160
1541400
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
qzeng-customSNPtvmap_l100_m2_e0hetalt
81.6901
69.0476
100.0000
89.1791
29132900
raldana-dualsentieonINDEL*segduphetalt
96.0000
92.3077
100.0000
93.7787
1201012200
ckim-dragenINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.8421
50500
raldana-dualsentieonINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ckim-dragenSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
83.0409
2912900
raldana-dualsentieonINDELI1_5map_l150_m1_e0hetalt
94.1176
88.8889
100.0000
94.4828
81800
raldana-dualsentieonSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
raldana-dualsentieonSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
ckim-gatkINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.0654
11100
rpoplin-dv42INDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
83.3333
10100
ckim-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
ckim-isaacINDEL*map_l150_m0_e0hetalt
71.4286
55.5556
100.0000
96.9925
54400
ckim-isaacINDELD6_15func_cdshetalt
66.6667
50.0000
100.0000
66.6667
11200
ckim-isaacINDELI1_5map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
97.0149
21200
ckim-isaacSNP*func_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-vqsrINDELI16_PLUSmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.7143
10100
ckim-vqsrINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
dgrover-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
dgrover-gatkINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3846
50500
dgrover-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
dgrover-gatkSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
77.1654
2912900
dgrover-gatkSNPtvHG002compoundhethetalt
99.8257
99.6520
100.0000
22.7518
859385900
egarrison-hhgaSNPtimap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
91.6667
32300
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.7805
12200
eyeh-varpipeINDELD6_15map_l100_m0_e0hetalt
41.6667
26.3158
100.0000
86.7925
5141400
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
gduggal-bwafbSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
77.6596
4214200
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
62.5000
45.4545
100.0000
87.5000
56500
gduggal-bwaplatINDELD6_15map_l150_m2_e0hetalt
76.9231
62.5000
100.0000
96.5035
53500
gduggal-bwaplatSNP*map_l125_m2_e0hetalt
66.6667
50.0000
100.0000
93.3628
15151500
gduggal-snapplatINDELD6_15map_l100_m2_e1hetalt
15.1899
8.2192
100.0000
96.9388
667600
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
hfeng-pmm1INDELI16_PLUSmap_l150_m2_e1hetalt
66.6667
50.0000
100.0000
93.7500
11100
hfeng-pmm1SNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
75.7576
2402400
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.0849
87.0643
100.0000
31.6290
1124167115000
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.3545
94.8454
100.0000
23.3333
9259200
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.0714
83.6066
100.0000
54.0541
51105100
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500