PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84951-85000 / 86044 show all
ckim-vqsrINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
ckim-vqsrINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9554
10100
ckim-vqsrINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2647
10100
ckim-vqsrINDELD6_15func_cds*
100.0000
100.0000
100.0000
56.5657
4304300
ckim-vqsrINDELD6_15func_cdshet
100.0000
100.0000
100.0000
53.9683
2902900
ckim-vqsrINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-vqsrINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
ckim-vqsrINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.1831
60600
ckim-vqsrINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8873
30300
ckim-vqsrINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
ckim-vqsrINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.0769
10100
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
56.6265
3633600
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.8723
40400
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.4252
20200
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
92.0000
20200
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
93.3333
10100
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
85.2381
155015500
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.3810
7407400
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1788
90900
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8102
60600
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.5915
577757800
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
22.5000
9349300
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
ckim-vqsrINDELD6_15map_l100_m0_e0hetalt
97.2973
94.7368
100.0000
83.3333
1811800
ckim-vqsrINDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
90.6883
2312300
ckim-vqsrINDELD6_15map_l100_m1_e0hetalt
96.1832
92.6471
100.0000
73.9669
6356300
ckim-vqsrINDELD6_15map_l100_m1_e0homalt
98.4127
96.8750
100.0000
86.9748
6226200
ckim-vqsrINDELD6_15map_l100_m2_e0hetalt
96.1832
92.6471
100.0000
75.2941
6356300
ckim-vqsrINDELD6_15map_l100_m2_e0homalt
98.4375
96.9231
100.0000
87.4251
6326300
ckim-vqsrINDELD6_15map_l100_m2_e1hetalt
95.7143
91.7808
100.0000
75.0929
6766700
ckim-vqsrINDELD6_15map_l100_m2_e1homalt
98.4848
97.0149
100.0000
87.3294
6526500
ckim-vqsrINDELD6_15map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
90.9091
60600
ckim-vqsrINDELD6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
93.1429
1201200
ckim-vqsrINDELD6_15map_l125_m1_e0hetalt
97.2973
94.7368
100.0000
86.2595
1811800
ckim-vqsrINDELD6_15map_l125_m1_e0homalt
98.5075
97.0588
100.0000
89.5899
3313300
ckim-vqsrINDELD6_15map_l125_m2_e0hetalt
97.2973
94.7368
100.0000
87.6712
1811800
ckim-vqsrINDELD6_15map_l125_m2_e0homalt
98.5915
97.2222
100.0000
89.6450
3513500
ckim-vqsrINDELD6_15map_l125_m2_e1hetalt
94.7368
90.0000
100.0000
88.0000
1821800
ckim-vqsrINDELD6_15map_l125_m2_e1homalt
98.6301
97.2973
100.0000
89.5652
3613600
ckim-vqsrINDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.2281
50500
ckim-vqsrINDELD6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
95.0704
70700
ckim-vqsrINDELD6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
80800
ckim-vqsrINDELD6_15map_l150_m1_e0homalt
98.0392
96.1538
100.0000
90.0398
2512500
ckim-vqsrINDELD6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
92.7928
80800
ckim-vqsrINDELD6_15map_l150_m2_e0homalt
98.1818
96.4286
100.0000
90.2527
2712700
ckim-vqsrINDELD6_15map_l150_m2_e1hetalt
94.1176
88.8889
100.0000
92.9825
81800
ckim-vqsrINDELD6_15map_l150_m2_e1homalt
98.2456
96.5517
100.0000
90.0356
2812800
ckim-vqsrINDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
98.5782
60600