PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84701-84750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.5000 | 11 | 4 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.6316 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 94.5312 | 21 | 4 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.9772 | 11 | 4 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.0000 | 85.1852 | 100.0000 | 94.2643 | 23 | 4 | 23 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 94.7137 | 12 | 4 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.9583 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 97.5610 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 96.9432 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 97.1014 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 97.1831 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | * | 98.8439 | 97.7143 | 100.0000 | 91.5010 | 171 | 4 | 171 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.1830 | 82 | 1 | 82 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.4773 | 45 | 2 | 45 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.5036 | 6977 | 2 | 6977 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 15 | 0 | 15 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 15 | 0 | 15 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.9459 | 6 | 3 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.0588 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||