PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84301-84350 / 86044 show all
ckim-vqsrINDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
98.0583
21200
ckim-vqsrINDELI6_15map_l250_m2_e1*
85.7143
75.0000
100.0000
98.6928
62600
ckim-vqsrINDELI6_15map_l250_m2_e1het
88.8889
80.0000
100.0000
98.7952
41400
ckim-vqsrINDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
98.1308
21200
ckim-vqsrINDELI6_15map_sirenhetalt
97.8723
95.8333
100.0000
76.6892
6936900
ckim-vqsrINDELI6_15segduphetalt
97.7273
95.5556
100.0000
89.5377
4324300
ckim-vqsrINDELI6_15segduphomalt
100.0000
100.0000
100.0000
92.5750
4704700
ckim-vqsrINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
ckim-vqsrINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
ckim-vqsrINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
ckim-vqsrINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
ckim-vqsrSNP*HG002complexvarhetalt
96.6667
93.5484
100.0000
40.6953
2902029000
ckim-vqsrSNP*HG002compoundhethetalt
97.5030
95.1276
100.0000
23.3645
8204282000
ckim-vqsrSNP*func_cdshetalt
100.0000
100.0000
100.0000
61.5385
1001000
ckim-vqsrSNP*func_cdshomalt
99.7774
99.5558
100.0000
21.6155
694831694800
ckim-vqsrSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8666
99.7336
100.0000
51.5008
22466224600
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9276
99.8554
100.0000
56.9648
13812138100
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9710
106410600
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
30300
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200*
95.0000
90.4762
100.0000
97.4342
3843800
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200het
92.0000
85.1852
100.0000
97.9261
2342300
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9459
1501500
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5233
99.0511
100.0000
35.2554
668164668100
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
93.1818
3653600
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.8140
90900
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8529
70700
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.4684
20200
ckim-vqsrSNP*map_l100_m0_e0hetalt
22.2222
12.5000
100.0000
98.1308
214200
ckim-vqsrSNP*map_l100_m0_e0homalt
45.4479
29.4062
100.0000
84.0267
34178203341700
ckim-vqsrSNP*map_l100_m1_e0hetalt
48.1481
31.7073
100.0000
94.6058
13281300
ckim-vqsrSNP*map_l100_m2_e0hetalt
50.0000
33.3333
100.0000
94.9640
14281400
ckim-vqsrSNP*map_l100_m2_e1hetalt
51.7241
34.8837
100.0000
94.6237
15281500
ckim-vqsrSNP*map_l125_m0_e0homalt
36.1328
22.0501
100.0000
90.6459
14805232148000
ckim-vqsrSNP*map_l125_m1_e0hetalt
37.8378
23.3333
100.0000
96.4467
723700
ckim-vqsrSNP*map_l125_m2_e0hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNP*map_l125_m2_e1hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNP*map_l150_m0_e0homalt
32.3149
19.2712
100.0000
93.7742
788330178800
ckim-vqsrSNP*map_l150_m1_e0hetalt
33.3333
20.0000
100.0000
97.6608
416400
ckim-vqsrSNP*map_l150_m2_e0hetalt
33.3333
20.0000
100.0000
98.0583
416400
ckim-vqsrSNP*map_l150_m2_e1hetalt
33.3333
20.0000
100.0000
98.0583
416400