PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84251-84300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.3243 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 40.5222 | 612 | 29 | 615 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9529 | 94.0860 | 100.0000 | 69.8795 | 175 | 11 | 175 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2281 | 32 | 3 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2789 | 94.7020 | 100.0000 | 44.2379 | 143 | 8 | 150 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 47.9899 | 414 | 4 | 414 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 23.6246 | 235 | 2 | 236 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.2424 | 59 | 0 | 59 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 35.0000 | 12 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | * | 95.2381 | 90.9091 | 100.0000 | 93.9024 | 30 | 3 | 30 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | het | 96.9697 | 94.1176 | 100.0000 | 95.2522 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2000 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 80.0000 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.0411 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.3009 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2141 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | * | 92.8571 | 86.6667 | 100.0000 | 96.5333 | 13 | 2 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 96.9582 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.1373 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9655 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.1176 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m0_e0 | * | 93.3333 | 87.5000 | 100.0000 | 97.7987 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0526 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.3082 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | het | 96.5517 | 93.3333 | 100.0000 | 96.7290 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.7422 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | het | 96.5517 | 93.3333 | 100.0000 | 97.0833 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.7213 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | * | 96.1538 | 92.5926 | 100.0000 | 96.5847 | 25 | 2 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 96.9819 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.7047 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 98.9170 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 98.6333 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||